miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7661 3' -53.6 NC_001973.1 + 3570 0.66 0.975641
Target:  5'- gGCGCGCGAuGaCCGAcggCGCGcGcUUCGGc -3'
miRNA:   3'- -UGCGCGUU-C-GGCUua-GCGCaC-AAGCU- -5'
7661 3' -53.6 NC_001973.1 + 4224 0.69 0.886827
Target:  5'- gGCGCGCcuGCCGGcgcucguUUGCGUGagCGGc -3'
miRNA:   3'- -UGCGCGuuCGGCUu------AGCGCACaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 6229 0.66 0.975641
Target:  5'- -gGCGCccuGUCGGAUUGCGcgaaaacgccUGUUCGGc -3'
miRNA:   3'- ugCGCGuu-CGGCUUAGCGC----------ACAAGCU- -5'
7661 3' -53.6 NC_001973.1 + 7083 0.66 0.963853
Target:  5'- -aGCGCGAGuuGAGUCcgGCGcGcgCGAc -3'
miRNA:   3'- ugCGCGUUCggCUUAG--CGCaCaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 7909 0.66 0.967114
Target:  5'- gGCGUucuguuGCGAGgCGGAgCGCGUGUgcgCGGc -3'
miRNA:   3'- -UGCG------CGUUCgGCUUaGCGCACAa--GCU- -5'
7661 3' -53.6 NC_001973.1 + 10247 0.67 0.958176
Target:  5'- cACGCGCAgcGGgCGGcaguacggaguuugcGUCGCGUcgUCGAa -3'
miRNA:   3'- -UGCGCGU--UCgGCU---------------UAGCGCAcaAGCU- -5'
7661 3' -53.6 NC_001973.1 + 12055 0.72 0.750989
Target:  5'- uGCGCGCGAGCCGA-UCGaCGUugccGgaCGAc -3'
miRNA:   3'- -UGCGCGUUCGGCUuAGC-GCA----CaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 14605 0.67 0.956667
Target:  5'- gACGCGguGGCCGcccggcuGUCG-GUGcgCGAc -3'
miRNA:   3'- -UGCGCguUCGGCu------UAGCgCACaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 15538 0.68 0.916778
Target:  5'- uGCGCGCGAGCa-GAUC-CGUGUugugcgcccuccauUCGAu -3'
miRNA:   3'- -UGCGCGUUCGgcUUAGcGCACA--------------AGCU- -5'
7661 3' -53.6 NC_001973.1 + 16045 0.73 0.701248
Target:  5'- cGCGCGCcGGCCGGaguuaauaGUCGUGU-UUCGAu -3'
miRNA:   3'- -UGCGCGuUCGGCU--------UAGCGCAcAAGCU- -5'
7661 3' -53.6 NC_001973.1 + 17830 0.67 0.948563
Target:  5'- gACGCGCc-GUCGAggGUgGCGUGcccgUCGAa -3'
miRNA:   3'- -UGCGCGuuCGGCU--UAgCGCACa---AGCU- -5'
7661 3' -53.6 NC_001973.1 + 20920 0.81 0.303137
Target:  5'- uGCGCGCGAGCCGA-UUGCGUucugUCGAg -3'
miRNA:   3'- -UGCGCGUUCGGCUuAGCGCAca--AGCU- -5'
7661 3' -53.6 NC_001973.1 + 26553 0.66 0.960372
Target:  5'- -aGCGCAAccauuCCGAGUCGCGgg--CGAu -3'
miRNA:   3'- ugCGCGUUc----GGCUUAGCGCacaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 28076 0.67 0.956667
Target:  5'- cGCGCGCGGGCaCGAcgaggacgucAUUGCGgcgGagCGAc -3'
miRNA:   3'- -UGCGCGUUCG-GCU----------UAGCGCa--CaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 30348 0.71 0.788923
Target:  5'- uCGCGCAGGCCGAGUucgggccgccggCGCGg---CGAc -3'
miRNA:   3'- uGCGCGUUCGGCUUA------------GCGCacaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 33654 0.66 0.960012
Target:  5'- gGCGCGUcgucuucGAGCCGcacguAGUUGCGcuUGUUCGu -3'
miRNA:   3'- -UGCGCG-------UUCGGC-----UUAGCGC--ACAAGCu -5'
7661 3' -53.6 NC_001973.1 + 35410 0.68 0.924126
Target:  5'- cGCGCGCAAGUCuu-UCGCGc--UCGAc -3'
miRNA:   3'- -UGCGCGUUCGGcuuAGCGCacaAGCU- -5'
7661 3' -53.6 NC_001973.1 + 38020 0.74 0.66033
Target:  5'- -aGCGCGAGCaCGAAggGCGUcGUUUGAg -3'
miRNA:   3'- ugCGCGUUCG-GCUUagCGCA-CAAGCU- -5'
7661 3' -53.6 NC_001973.1 + 39406 0.66 0.959284
Target:  5'- cGCGCGcCAGGUCGGccgcggugaggcgcGUCGCGUccaGggCGAc -3'
miRNA:   3'- -UGCGC-GUUCGGCU--------------UAGCGCA---CaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 45466 0.69 0.886827
Target:  5'- uGCGCGCAA-UCGAacGUCGgCGUGU-CGAa -3'
miRNA:   3'- -UGCGCGUUcGGCU--UAGC-GCACAaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.