miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7661 5' -58.2 NC_001973.1 + 141113 1.11 0.001432
Target:  5'- gGACCGAGCUGAACGCCGGCUCGACGCa -3'
miRNA:   3'- -CUGGCUCGACUUGCGGCCGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 36842 0.79 0.205106
Target:  5'- cGACCGGcCUGAGgGCCGaCUCGGCGCg -3'
miRNA:   3'- -CUGGCUcGACUUgCGGCcGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 51464 0.79 0.220437
Target:  5'- cGGgCGAGCUcGAGCgGCCGGgUCGAUGCg -3'
miRNA:   3'- -CUgGCUCGA-CUUG-CGGCCgAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 111828 0.78 0.260022
Target:  5'- uGACCGAGUgGAugGCCgaggacGGCUCGcACGCc -3'
miRNA:   3'- -CUGGCUCGaCUugCGG------CCGAGC-UGCG- -5'
7661 5' -58.2 NC_001973.1 + 97121 0.77 0.285144
Target:  5'- cGACCugGAGUUGGucgagaacgaaACGCCGGCUCGACu- -3'
miRNA:   3'- -CUGG--CUCGACU-----------UGCGGCCGAGCUGcg -5'
7661 5' -58.2 NC_001973.1 + 42040 0.76 0.312143
Target:  5'- uGGCCGAGgUGAGCGCgGGCaguuUCGugGg -3'
miRNA:   3'- -CUGGCUCgACUUGCGgCCG----AGCugCg -5'
7661 5' -58.2 NC_001973.1 + 47794 0.76 0.319189
Target:  5'- aGGCCG-GCc--GCGCCGGC-CGACGCg -3'
miRNA:   3'- -CUGGCuCGacuUGCGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 30354 0.76 0.326353
Target:  5'- aGGCCGAGUUcGGGcCGCCGGCgCGGCGa -3'
miRNA:   3'- -CUGGCUCGA-CUU-GCGGCCGaGCUGCg -5'
7661 5' -58.2 NC_001973.1 + 56349 0.76 0.333637
Target:  5'- cGGCCGcGCUcGGgccccgacucgGCGCCGcGCUCGGCGCc -3'
miRNA:   3'- -CUGGCuCGA-CU-----------UGCGGC-CGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 32564 0.75 0.348558
Target:  5'- cGCCGAcGCcgc-CGUCGGCUCGGCGCg -3'
miRNA:   3'- cUGGCU-CGacuuGCGGCCGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 109546 0.75 0.363949
Target:  5'- gGGCgCGAGCcgcgcGAACGCCGGCgCGGgGCg -3'
miRNA:   3'- -CUG-GCUCGa----CUUGCGGCCGaGCUgCG- -5'
7661 5' -58.2 NC_001973.1 + 146002 0.74 0.387905
Target:  5'- cGGCUcgggGAGCgGGucCGCCGGCUCGAgCGCg -3'
miRNA:   3'- -CUGG----CUCGaCUu-GCGGCCGAGCU-GCG- -5'
7661 5' -58.2 NC_001973.1 + 53843 0.74 0.40444
Target:  5'- cGACCGAGCUc-GCcCCGGCggcggCGGCGCc -3'
miRNA:   3'- -CUGGCUCGAcuUGcGGCCGa----GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 134952 0.74 0.40444
Target:  5'- uGACUuuuuGAGC-GAACGCCGGgUCGGCGa -3'
miRNA:   3'- -CUGG----CUCGaCUUGCGGCCgAGCUGCg -5'
7661 5' -58.2 NC_001973.1 + 95710 0.74 0.412873
Target:  5'- cGCCGAcgGCgcgGuGCGCCGGCUguUGGCGCa -3'
miRNA:   3'- cUGGCU--CGa--CuUGCGGCCGA--GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 2675 0.74 0.412873
Target:  5'- -cCCGAGCUcGAGC-UCGGC-CGACGCg -3'
miRNA:   3'- cuGGCUCGA-CUUGcGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 59475 0.74 0.421414
Target:  5'- aGCUGAGCaGAACGUCGGCg-GugGCc -3'
miRNA:   3'- cUGGCUCGaCUUGCGGCCGagCugCG- -5'
7661 5' -58.2 NC_001973.1 + 136574 0.74 0.421414
Target:  5'- aGCaUGGcGCUGcGCGCCGGCgCGACGCu -3'
miRNA:   3'- cUG-GCU-CGACuUGCGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 32284 0.74 0.421414
Target:  5'- uGGCCGcguacaAGUUGAACGCCaGCUCGuCGUu -3'
miRNA:   3'- -CUGGC------UCGACUUGCGGcCGAGCuGCG- -5'
7661 5' -58.2 NC_001973.1 + 7250 0.74 0.421414
Target:  5'- -gUCGAGCaGAuGCGCagcgGGCUCGGCGCg -3'
miRNA:   3'- cuGGCUCGaCU-UGCGg---CCGAGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.