miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7661 5' -58.2 NC_001973.1 + 951 0.72 0.512181
Target:  5'- aGACUGAGCUuccGGCGCgGacGCUCGACGUc -3'
miRNA:   3'- -CUGGCUCGAc--UUGCGgC--CGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 2675 0.74 0.412873
Target:  5'- -cCCGAGCUcGAGC-UCGGC-CGACGCg -3'
miRNA:   3'- cuGGCUCGA-CUUGcGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 3891 0.66 0.827632
Target:  5'- cGACCGAggcgucGCUcuGCGCCGGgUagacgGGCGCg -3'
miRNA:   3'- -CUGGCU------CGAcuUGCGGCCgAg----CUGCG- -5'
7661 5' -58.2 NC_001973.1 + 4195 0.69 0.689656
Target:  5'- cGCCGcAGCUGGaggugcauGCGCUGGaa-GGCGCg -3'
miRNA:   3'- cUGGC-UCGACU--------UGCGGCCgagCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 5831 0.68 0.757059
Target:  5'- cGCCGAuCUGGGCGCgucguuCGGCgagCGcACGCg -3'
miRNA:   3'- cUGGCUcGACUUGCG------GCCGa--GC-UGCG- -5'
7661 5' -58.2 NC_001973.1 + 6206 0.66 0.827632
Target:  5'- aACCGgcGGCgcggUGCCGGCgCGGCGCc -3'
miRNA:   3'- cUGGC--UCGacuuGCGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 6408 0.69 0.669862
Target:  5'- uGGCCGAGU---GCG-CGGCggCGGCGCg -3'
miRNA:   3'- -CUGGCUCGacuUGCgGCCGa-GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 6503 0.67 0.784541
Target:  5'- uACCG-GCUGGgcgGCGCgGGCgugcCGACGa -3'
miRNA:   3'- cUGGCuCGACU---UGCGgCCGa---GCUGCg -5'
7661 5' -58.2 NC_001973.1 + 6782 0.68 0.728631
Target:  5'- cGGCC--GCUGGACGCCGGagaaACGCg -3'
miRNA:   3'- -CUGGcuCGACUUGCGGCCgagcUGCG- -5'
7661 5' -58.2 NC_001973.1 + 7062 0.67 0.819322
Target:  5'- --aCGAGCUGcGCGCCcuGgUCGAgCGCg -3'
miRNA:   3'- cugGCUCGACuUGCGGc-CgAGCU-GCG- -5'
7661 5' -58.2 NC_001973.1 + 7250 0.74 0.421414
Target:  5'- -gUCGAGCaGAuGCGCagcgGGCUCGGCGCg -3'
miRNA:   3'- cuGGCUCGaCU-UGCGg---CCGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 7730 0.72 0.502713
Target:  5'- cGACUGAcGCUgGAGCaCCGGUgCGGCGCg -3'
miRNA:   3'- -CUGGCU-CGA-CUUGcGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 8784 0.69 0.679778
Target:  5'- aGGCCGAGCgucAACGCgaCGGaacccgCGGCGCg -3'
miRNA:   3'- -CUGGCUCGac-UUGCG--GCCga----GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 9628 0.67 0.819322
Target:  5'- cGAUCGccGCUG-GCGuUCGGCUCGaggGCGCg -3'
miRNA:   3'- -CUGGCu-CGACuUGC-GGCCGAGC---UGCG- -5'
7661 5' -58.2 NC_001973.1 + 10523 0.68 0.747677
Target:  5'- cGCCaGGCaguaggagGAGC-CCGGCUCGACGa -3'
miRNA:   3'- cUGGcUCGa-------CUUGcGGCCGAGCUGCg -5'
7661 5' -58.2 NC_001973.1 + 10645 0.68 0.747677
Target:  5'- cGugCGAcCUGcacGGCGUCGGCgucgCGugGCa -3'
miRNA:   3'- -CugGCUcGAC---UUGCGGCCGa---GCugCG- -5'
7661 5' -58.2 NC_001973.1 + 13280 0.66 0.859109
Target:  5'- cACCGAGCUGGuCGCUaaGGUgguggacuugUCGgaACGCg -3'
miRNA:   3'- cUGGCUCGACUuGCGG--CCG----------AGC--UGCG- -5'
7661 5' -58.2 NC_001973.1 + 13933 0.67 0.819322
Target:  5'- cACCGcAGaUGGcGCGCCGGCaagcaGACGCa -3'
miRNA:   3'- cUGGC-UCgACU-UGCGGCCGag---CUGCG- -5'
7661 5' -58.2 NC_001973.1 + 15996 0.72 0.531331
Target:  5'- aACUGAGCgcgccgGAcgaccgaugGCGCCaGCUCGGCGUa -3'
miRNA:   3'- cUGGCUCGa-----CU---------UGCGGcCGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 16882 0.7 0.629985
Target:  5'- -uUCGAuGCUGAcaaacuuguucGCGCCGGCggCGGCGg -3'
miRNA:   3'- cuGGCU-CGACU-----------UGCGGCCGa-GCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.