miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 21630 0.68 0.954508
Target:  5'- gUGCAcguGGAAGCCGugcaGG-CCgCGCGGCAg -3'
miRNA:   3'- -ACGU---UUUUCGGCug--CUaGG-GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 23565 0.7 0.867084
Target:  5'- cGCAGccGGCCGGCGGacgcgccgCCCGCGcuGCGc -3'
miRNA:   3'- aCGUUuuUCGGCUGCUa-------GGGCGC--UGU- -5'
7662 3' -52.6 NC_001973.1 + 23722 0.67 0.965443
Target:  5'- cGCugggcucGCUGACGggCCCGaCGGCGa -3'
miRNA:   3'- aCGuuuuu--CGGCUGCuaGGGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 24545 0.72 0.781067
Target:  5'- gGCGAGAAgcucGCCGACGAguUCCUG-GGCAa -3'
miRNA:   3'- aCGUUUUU----CGGCUGCU--AGGGCgCUGU- -5'
7662 3' -52.6 NC_001973.1 + 27920 0.66 0.979323
Target:  5'- aGCAcgcGAGCCGGCGA-CCCGacaccGCAc -3'
miRNA:   3'- aCGUuu-UUCGGCUGCUaGGGCgc---UGU- -5'
7662 3' -52.6 NC_001973.1 + 28692 0.73 0.732291
Target:  5'- gGCGAAguguccguccAGGUCGGCGAUgagCCGCGACAg -3'
miRNA:   3'- aCGUUU----------UUCGGCUGCUAg--GGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 28953 0.66 0.97695
Target:  5'- gGCAGcgGGGGCCGGCaGUCggGCGGCGa -3'
miRNA:   3'- aCGUU--UUUCGGCUGcUAGggCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 30422 0.68 0.941444
Target:  5'- cGCGAAcuGCCGACGG-CacaCGgGACAc -3'
miRNA:   3'- aCGUUUuuCGGCUGCUaGg--GCgCUGU- -5'
7662 3' -52.6 NC_001973.1 + 31466 0.74 0.691582
Target:  5'- cGCccgacucGAAGCCGACGGUCUgcgCGCGAUAg -3'
miRNA:   3'- aCGuu-----UUUCGGCUGCUAGG---GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 32543 0.66 0.983518
Target:  5'- cGCG---AGCuCGGCGAUCgCCGCcgccGACGc -3'
miRNA:   3'- aCGUuuuUCG-GCUGCUAG-GGCG----CUGU- -5'
7662 3' -52.6 NC_001973.1 + 33385 0.72 0.817642
Target:  5'- cGUucGAGGCCGACGAcgcgUCCGCG-CAa -3'
miRNA:   3'- aCGuuUUUCGGCUGCUa---GGGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 35197 0.69 0.914737
Target:  5'- cGCGAucaacGCCGACG-UCaCCGcCGACAu -3'
miRNA:   3'- aCGUUuuu--CGGCUGCuAG-GGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 36770 0.66 0.974383
Target:  5'- aGCGAGAGGCgcgCGACGcgCUCGCa--- -3'
miRNA:   3'- aCGUUUUUCG---GCUGCuaGGGCGcugu -5'
7662 3' -52.6 NC_001973.1 + 38959 0.7 0.887535
Target:  5'- cGCgAAGAGGCCGGCGAgcguuuauaaaCCGaCGGCGg -3'
miRNA:   3'- aCG-UUUUUCGGCUGCUag---------GGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 39755 0.69 0.914737
Target:  5'- gGCGAGgcccGAGCCGAagcugacguacaCGAcUCCGCGGCGc -3'
miRNA:   3'- aCGUUU----UUCGGCU------------GCUaGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 43975 0.68 0.950395
Target:  5'- gGCGGccucucuGCCGGCGAUCCaGCG-CAg -3'
miRNA:   3'- aCGUUuuu----CGGCUGCUAGGgCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 49664 0.69 0.902317
Target:  5'- aGCAAAucGcCCGGCuGAUCgaCGCGGCGa -3'
miRNA:   3'- aCGUUUuuC-GGCUG-CUAGg-GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 52181 0.71 0.834911
Target:  5'- gGCGAcGAGCgCGGCGGggUCgCGCGACu -3'
miRNA:   3'- aCGUUuUUCG-GCUGCU--AGgGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 53328 0.73 0.761907
Target:  5'- cUGCAGGgcGUCGAUGcgCCCGCGcCGg -3'
miRNA:   3'- -ACGUUUuuCGGCUGCuaGGGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 55246 0.67 0.971614
Target:  5'- gGCGAGAGGCCuGC--UCUCGaCGACAc -3'
miRNA:   3'- aCGUUUUUCGGcUGcuAGGGC-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.