miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 1709 0.66 0.982334
Target:  5'- gGCGuuGGGCaCGuacucgcguuugaacACGAUCUCGCGAUu -3'
miRNA:   3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 2095 0.66 0.974383
Target:  5'- cGCAAuc-GCCGGCGcguacuugCCCGUGcACAg -3'
miRNA:   3'- aCGUUuuuCGGCUGCua------GGGCGC-UGU- -5'
7662 3' -52.6 NC_001973.1 + 4846 0.69 0.926167
Target:  5'- cGCuuAAAGUCGGCGGg--CGCGACGu -3'
miRNA:   3'- aCGuuUUUCGGCUGCUaggGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 5491 0.66 0.983518
Target:  5'- gGUAGAAGGCuCGAuCGccgCCCGCG-CGg -3'
miRNA:   3'- aCGUUUUUCG-GCU-GCua-GGGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 5949 0.66 0.981509
Target:  5'- cGCGAcgcGGCCGGCGGa--UGCGACGu -3'
miRNA:   3'- aCGUUuu-UCGGCUGCUaggGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 6517 0.78 0.496242
Target:  5'- cGCGGGcguGCCGACGAUUuuGCGGCu -3'
miRNA:   3'- aCGUUUuu-CGGCUGCUAGggCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 7443 0.68 0.950395
Target:  5'- cGCAcguGAGCuCGGCGGUgCggCGCGACGa -3'
miRNA:   3'- aCGUuu-UUCG-GCUGCUAgG--GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 7924 0.65 0.985002
Target:  5'- gGCGGAGcgcgugugcgcGGCCGGCGuggugcacgcgCCCGCGuGCGc -3'
miRNA:   3'- aCGUUUU-----------UCGGCUGCua---------GGGCGC-UGU- -5'
7662 3' -52.6 NC_001973.1 + 8424 0.67 0.958384
Target:  5'- gGCAAGAGccGCCGcgucguCGcgCCCGuCGACGa -3'
miRNA:   3'- aCGUUUUU--CGGCu-----GCuaGGGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 8499 0.74 0.701861
Target:  5'- cGCGAAuggaacucGAGCCggGACGAUUgCGCGACGc -3'
miRNA:   3'- aCGUUU--------UUCGG--CUGCUAGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 8597 0.73 0.752142
Target:  5'- cGCgAGAAAGCCGGCGGccgCgCCGCgGACGa -3'
miRNA:   3'- aCG-UUUUUCGGCUGCUa--G-GGCG-CUGU- -5'
7662 3' -52.6 NC_001973.1 + 8632 0.68 0.946042
Target:  5'- cGCc-GAGGCCGACGAgaaacgCCaaCGUGACGc -3'
miRNA:   3'- aCGuuUUUCGGCUGCUa-----GG--GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 8775 0.72 0.790443
Target:  5'- cUGCAAcaGAGGCCGagcgucaacGCGAcggaaCCCGCGGCGc -3'
miRNA:   3'- -ACGUU--UUUCGGC---------UGCUa----GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 10595 0.69 0.920004
Target:  5'- gGCAAAGuauuggcAGuuGGCGAggccCUCGCGGCAc -3'
miRNA:   3'- aCGUUUU-------UCggCUGCUa---GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 11160 0.66 0.982334
Target:  5'- gGCGuuGGGCaCGuacucggacuugaacACGAUCUCGCGAUu -3'
miRNA:   3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 12075 0.67 0.962027
Target:  5'- uUGCc---GGaCGACGGUCCCGaUGACAu -3'
miRNA:   3'- -ACGuuuuUCgGCUGCUAGGGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 14379 0.68 0.946042
Target:  5'- cGCGGcGAGGCCGGacaGuagCCCGCGAaCAg -3'
miRNA:   3'- aCGUU-UUUCGGCUg--Cua-GGGCGCU-GU- -5'
7662 3' -52.6 NC_001973.1 + 15396 0.74 0.691582
Target:  5'- aGCGGGGAGgCGACGuucaAUUCCGCGAUg -3'
miRNA:   3'- aCGUUUUUCgGCUGC----UAGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 16934 0.66 0.97695
Target:  5'- aGCAAAAAGaagGGCGuUUCCGCGAa- -3'
miRNA:   3'- aCGUUUUUCgg-CUGCuAGGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 18373 0.67 0.965443
Target:  5'- cGCAAAAcucGGCCGGCG-UUUCGcCGGCc -3'
miRNA:   3'- aCGUUUU---UCGGCUGCuAGGGC-GCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.