miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 140337 1.09 0.006477
Target:  5'- uUGCAAAAAGCCGACGAUCCCGCGACAc -3'
miRNA:   3'- -ACGUUUUUCGGCUGCUAGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 6517 0.78 0.496242
Target:  5'- cGCGGGcguGCCGACGAUUuuGCGGCu -3'
miRNA:   3'- aCGUUUuu-CGGCUGCUAGggCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 158669 0.77 0.516035
Target:  5'- gGCAAGAAGuCCGGCGAagCCgGCGGCc -3'
miRNA:   3'- aCGUUUUUC-GGCUGCUa-GGgCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 15396 0.74 0.691582
Target:  5'- aGCGGGGAGgCGACGuucaAUUCCGCGAUg -3'
miRNA:   3'- aCGUUUUUCgGCUGC----UAGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 31466 0.74 0.691582
Target:  5'- cGCccgacucGAAGCCGACGGUCUgcgCGCGAUAg -3'
miRNA:   3'- aCGuu-----UUUCGGCUGCUAGG---GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 8499 0.74 0.701861
Target:  5'- cGCGAAuggaacucGAGCCggGACGAUUgCGCGACGc -3'
miRNA:   3'- aCGUUU--------UUCGG--CUGCUAGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 28692 0.73 0.732291
Target:  5'- gGCGAAguguccguccAGGUCGGCGAUgagCCGCGACAg -3'
miRNA:   3'- aCGUUU----------UUCGGCUGCUAg--GGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 131484 0.73 0.752142
Target:  5'- aGguGGAGGUCGGCGggCCCGCcGCGc -3'
miRNA:   3'- aCguUUUUCGGCUGCuaGGGCGcUGU- -5'
7662 3' -52.6 NC_001973.1 + 8597 0.73 0.752142
Target:  5'- cGCgAGAAAGCCGGCGGccgCgCCGCgGACGa -3'
miRNA:   3'- aCG-UUUUUCGGCUGCUa--G-GGCG-CUGU- -5'
7662 3' -52.6 NC_001973.1 + 53328 0.73 0.761907
Target:  5'- cUGCAGGgcGUCGAUGcgCCCGCGcCGg -3'
miRNA:   3'- -ACGUUUuuCGGCUGCuaGGGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 24545 0.72 0.781067
Target:  5'- gGCGAGAAgcucGCCGACGAguUCCUG-GGCAa -3'
miRNA:   3'- aCGUUUUU----CGGCUGCU--AGGGCgCUGU- -5'
7662 3' -52.6 NC_001973.1 + 158588 0.72 0.781067
Target:  5'- --aAAAAAGCuCGGCGGUCCCGCcGCc -3'
miRNA:   3'- acgUUUUUCG-GCUGCUAGGGCGcUGu -5'
7662 3' -52.6 NC_001973.1 + 8775 0.72 0.790443
Target:  5'- cUGCAAcaGAGGCCGagcgucaacGCGAcggaaCCCGCGGCGc -3'
miRNA:   3'- -ACGUU--UUUCGGC---------UGCUa----GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 33385 0.72 0.817642
Target:  5'- cGUucGAGGCCGACGAcgcgUCCGCG-CAa -3'
miRNA:   3'- aCGuuUUUCGGCUGCUa---GGGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 52181 0.71 0.834911
Target:  5'- gGCGAcGAGCgCGGCGGggUCgCGCGACu -3'
miRNA:   3'- aCGUUuUUCG-GCUGCU--AGgGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 121283 0.71 0.834911
Target:  5'- cGCGAAAuucgcGGCCGuCG--CCCGCGGCGc -3'
miRNA:   3'- aCGUUUU-----UCGGCuGCuaGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 93711 0.71 0.859355
Target:  5'- aGCAAGAcaaGGCCG-CGAagcgcuaCCGCGACGa -3'
miRNA:   3'- aCGUUUU---UCGGCuGCUag-----GGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 59007 0.71 0.859355
Target:  5'- gGCGAGcggcGCCGACGuguucuuuUCCgGCGACGg -3'
miRNA:   3'- aCGUUUuu--CGGCUGCu-------AGGgCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 86951 0.71 0.862472
Target:  5'- cGuCGucAAGCCGACGGcgccguccgccccgCCCGCGGCGc -3'
miRNA:   3'- aC-GUuuUUCGGCUGCUa-------------GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 79077 0.7 0.867084
Target:  5'- aGCu-GGAGCgCGACGAcaagUUUCGCGACAa -3'
miRNA:   3'- aCGuuUUUCG-GCUGCU----AGGGCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.