Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 140374 | 1.08 | 0.00088 |
Target: 5'- cGUCGCCGCCGAGCGGCUGGCUCUCGAg -3' miRNA: 3'- -CAGCGGCGGCUCGCCGACCGAGAGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 77300 | 0.76 | 0.181135 |
Target: 5'- -cCGCCGCCGAgacggGCGGCgcGGCUC-CGAa -3' miRNA: 3'- caGCGGCGGCU-----CGCCGa-CCGAGaGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 37782 | 0.74 | 0.224207 |
Target: 5'- -gCGCCGCCGcGCGGC--GCUCUCGu -3' miRNA: 3'- caGCGGCGGCuCGCCGacCGAGAGCu -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 132536 | 0.74 | 0.240391 |
Target: 5'- --gGCCGCCGGgcGCGGC-GGCgggCUCGAg -3' miRNA: 3'- cagCGGCGGCU--CGCCGaCCGa--GAGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 61678 | 0.73 | 0.245999 |
Target: 5'- aGUCGCgGCgCGaAGCGGCgucGGCgcgCUCGAg -3' miRNA: 3'- -CAGCGgCG-GC-UCGCCGa--CCGa--GAGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 17444 | 0.73 | 0.263472 |
Target: 5'- cGUUGCCGCCGAaCGGC-GGCaugcaCUCGAg -3' miRNA: 3'- -CAGCGGCGGCUcGCCGaCCGa----GAGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 143161 | 0.72 | 0.308141 |
Target: 5'- aUCGaCGCCGGGCGGCUGcGUggaUCGGa -3' miRNA: 3'- cAGCgGCGGCUCGCCGAC-CGag-AGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 138636 | 0.71 | 0.336161 |
Target: 5'- -gCGCCaGCgCGGGCGGCacgGGCUUUUGGa -3' miRNA: 3'- caGCGG-CG-GCUCGCCGa--CCGAGAGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 25927 | 0.71 | 0.350852 |
Target: 5'- cUCGCCGCCGcG-GGCgGGCUCgCGGc -3' miRNA: 3'- cAGCGGCGGCuCgCCGaCCGAGaGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 71088 | 0.7 | 0.381581 |
Target: 5'- uGUCGCUgGCCGAGCaGCUGGUcacgcacaugaUCUaCGAc -3' miRNA: 3'- -CAGCGG-CGGCUCGcCGACCG-----------AGA-GCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 133918 | 0.7 | 0.400859 |
Target: 5'- cGUCGCCGCCGcccuguccaggugguAGCacgcgGGCUgGGCguaCUCGAc -3' miRNA: 3'- -CAGCGGCGGC---------------UCG-----CCGA-CCGa--GAGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 88488 | 0.7 | 0.405775 |
Target: 5'- -gUGCCGCCGGcGCGGCgcGGCUC-Ca- -3' miRNA: 3'- caGCGGCGGCU-CGCCGa-CCGAGaGcu -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 16904 | 0.69 | 0.422431 |
Target: 5'- -gCGCCGgCG-GCGGC-GGCcUCUCGGc -3' miRNA: 3'- caGCGGCgGCuCGCCGaCCG-AGAGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 71772 | 0.69 | 0.436048 |
Target: 5'- -cCGCCGCCGAGCucgaggccGGC-GGCgcccccgucgccgCUCGAg -3' miRNA: 3'- caGCGGCGGCUCG--------CCGaCCGa------------GAGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 109511 | 0.69 | 0.439492 |
Target: 5'- -cCGCCGCCGuucGCcGCuUGGCUCUUGc -3' miRNA: 3'- caGCGGCGGCu--CGcCG-ACCGAGAGCu -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 112755 | 0.69 | 0.448168 |
Target: 5'- -aCGgCGaCCGuGCGGCcGGCUCgUCGAc -3' miRNA: 3'- caGCgGC-GGCuCGCCGaCCGAG-AGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 36320 | 0.69 | 0.4658 |
Target: 5'- -cCGCgGCCGAcGCGGCcgacgcgGGC-CUCGGc -3' miRNA: 3'- caGCGgCGGCU-CGCCGa------CCGaGAGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 109859 | 0.69 | 0.473852 |
Target: 5'- -cCGCCGCCGAcgaggacGCGGCgcgcGGCgUCUaCGGc -3' miRNA: 3'- caGCGGCGGCU-------CGCCGa---CCG-AGA-GCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 8847 | 0.69 | 0.474751 |
Target: 5'- -gCGCUGCUGGcGCGGCgacacgGGCUgUUCGAg -3' miRNA: 3'- caGCGGCGGCU-CGCCGa-----CCGA-GAGCU- -5' |
|||||||
7662 | 5' | -62.6 | NC_001973.1 | + | 56170 | 0.68 | 0.520706 |
Target: 5'- uGUCGUCGCUGu-CGGC-GGCgcgCUCGAc -3' miRNA: 3'- -CAGCGGCGGCucGCCGaCCGa--GAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home