miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 5' -62.6 NC_001973.1 + 77300 0.76 0.181135
Target:  5'- -cCGCCGCCGAgacggGCGGCgcGGCUC-CGAa -3'
miRNA:   3'- caGCGGCGGCU-----CGCCGa-CCGAGaGCU- -5'
7662 5' -62.6 NC_001973.1 + 81818 0.66 0.640378
Target:  5'- -gCGCCGCCG-GCGGCgacgagacgacgaGCUCaggUCGAc -3'
miRNA:   3'- caGCGGCGGCuCGCCGac-----------CGAG---AGCU- -5'
7662 5' -62.6 NC_001973.1 + 88488 0.7 0.405775
Target:  5'- -gUGCCGCCGGcGCGGCgcGGCUC-Ca- -3'
miRNA:   3'- caGCGGCGGCU-CGCCGa-CCGAGaGcu -5'
7662 5' -62.6 NC_001973.1 + 89098 0.66 0.626683
Target:  5'- uGUCGUCGUCGAGCuccgcgGGC-GcGCUCUCc- -3'
miRNA:   3'- -CAGCGGCGGCUCG------CCGaC-CGAGAGcu -5'
7662 5' -62.6 NC_001973.1 + 93773 0.67 0.587659
Target:  5'- -cCGCCGCCGucgauucccaAGCGGUacgccUGGCUCa--- -3'
miRNA:   3'- caGCGGCGGC----------UCGCCG-----ACCGAGagcu -5'
7662 5' -62.6 NC_001973.1 + 104276 0.66 0.636465
Target:  5'- -cCGCCGCCGGGCuGGUcgUGuCUCuguUCGAa -3'
miRNA:   3'- caGCGGCGGCUCG-CCG--ACcGAG---AGCU- -5'
7662 5' -62.6 NC_001973.1 + 109116 0.67 0.558677
Target:  5'- uGUUGaaCCGCCGcGGCGGC-GGcCUCUUGGg -3'
miRNA:   3'- -CAGC--GGCGGC-UCGCCGaCC-GAGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 109511 0.69 0.439492
Target:  5'- -cCGCCGCCGuucGCcGCuUGGCUCUUGc -3'
miRNA:   3'- caGCGGCGGCu--CGcCG-ACCGAGAGCu -5'
7662 5' -62.6 NC_001973.1 + 109859 0.69 0.473852
Target:  5'- -cCGCCGCCGAcgaggacGCGGCgcgcGGCgUCUaCGGc -3'
miRNA:   3'- caGCGGCGGCU-------CGCCGa---CCG-AGA-GCU- -5'
7662 5' -62.6 NC_001973.1 + 112755 0.69 0.448168
Target:  5'- -aCGgCGaCCGuGCGGCcGGCUCgUCGAc -3'
miRNA:   3'- caGCgGC-GGCuCGCCGaCCGAG-AGCU- -5'
7662 5' -62.6 NC_001973.1 + 119873 0.66 0.630596
Target:  5'- cGUCGUCGCCGgcgacuaucAGCgccccuuggagcccgGGCacGCUCUCGAu -3'
miRNA:   3'- -CAGCGGCGGC---------UCG---------------CCGacCGAGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 124798 0.68 0.530112
Target:  5'- -cCGCCGgCGAG-GGCcggGGC-CUCGAu -3'
miRNA:   3'- caGCGGCgGCUCgCCGa--CCGaGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 131853 0.66 0.646245
Target:  5'- cGUCGUCGUCGAuugcuucgcaauGCGGCaGGCacagacgcgCUCGGu -3'
miRNA:   3'- -CAGCGGCGGCU------------CGCCGaCCGa--------GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 132536 0.74 0.240391
Target:  5'- --gGCCGCCGGgcGCGGC-GGCgggCUCGAg -3'
miRNA:   3'- cagCGGCGGCU--CGCCGaCCGa--GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 133918 0.7 0.400859
Target:  5'- cGUCGCCGCCGcccuguccaggugguAGCacgcgGGCUgGGCguaCUCGAc -3'
miRNA:   3'- -CAGCGGCGGC---------------UCG-----CCGA-CCGa--GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 134132 0.67 0.587659
Target:  5'- uUCGUCGCCGGGCGGa----UCUCGu -3'
miRNA:   3'- cAGCGGCGGCUCGCCgaccgAGAGCu -5'
7662 5' -62.6 NC_001973.1 + 138636 0.71 0.336161
Target:  5'- -gCGCCaGCgCGGGCGGCacgGGCUUUUGGa -3'
miRNA:   3'- caGCGG-CG-GCUCGCCGa--CCGAGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 140116 0.67 0.549102
Target:  5'- -gCGCgGCCGuGauGCUGGUguUCUCGGa -3'
miRNA:   3'- caGCGgCGGCuCgcCGACCG--AGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 140374 1.08 0.00088
Target:  5'- cGUCGCCGCCGAGCGGCUGGCUCUCGAg -3'
miRNA:   3'- -CAGCGGCGGCUCGCCGACCGAGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 141558 0.66 0.636465
Target:  5'- cUCGCCGCCGcGCaaGCUcGCgCUCGAc -3'
miRNA:   3'- cAGCGGCGGCuCGc-CGAcCGaGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.