miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7663 3' -55.6 NC_001973.1 + 139818 1.11 0.002634
Target:  5'- aUCGAGCCGCCGUUGCGAUUCACGGACg -3'
miRNA:   3'- -AGCUCGGCGGCAACGCUAAGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 30362 0.79 0.298242
Target:  5'- uUCGGGCCGCCGgcgcgGCGAcUCggguGCGGGCc -3'
miRNA:   3'- -AGCUCGGCGGCaa---CGCUaAG----UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 32566 0.78 0.348653
Target:  5'- cCGAcGCCGCCGUcggcucggcgcgcUGCGA--CACGGACg -3'
miRNA:   3'- aGCU-CGGCGGCA-------------ACGCUaaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 18625 0.76 0.441742
Target:  5'- aCGAGCCGCCGUU-CGAgccgUCcgacggcccgACGGGCa -3'
miRNA:   3'- aGCUCGGCGGCAAcGCUa---AG----------UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 35836 0.75 0.488022
Target:  5'- -gGGGCCGCUGUggGCGAUcCggACGGACa -3'
miRNA:   3'- agCUCGGCGGCAa-CGCUAaG--UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 152311 0.74 0.536459
Target:  5'- aUCGAGCgCGCuCGUUaucguggacGCGGUgCGCGGGCg -3'
miRNA:   3'- -AGCUCG-GCG-GCAA---------CGCUAaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 5747 0.73 0.586461
Target:  5'- aCGGGCCGCCGaaGCGGccCACGGcGCu -3'
miRNA:   3'- aGCUCGGCGGCaaCGCUaaGUGCC-UG- -5'
7663 3' -55.6 NC_001973.1 + 93746 0.73 0.616903
Target:  5'- gCGAGCCGCCcg-GCGAccaggaGCGGGCc -3'
miRNA:   3'- aGCUCGGCGGcaaCGCUaag---UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 140526 0.72 0.637267
Target:  5'- -aGAGCaCGCUGcUGCGAUUCAUcGACu -3'
miRNA:   3'- agCUCG-GCGGCaACGCUAAGUGcCUG- -5'
7663 3' -55.6 NC_001973.1 + 17469 0.72 0.64643
Target:  5'- cUCGAGCaUGCCGUgcgccGCGAggucggcuucuauUUCGCGGAa -3'
miRNA:   3'- -AGCUCG-GCGGCAa----CGCU-------------AAGUGCCUg -5'
7663 3' -55.6 NC_001973.1 + 29328 0.72 0.657615
Target:  5'- gUGAGCa--CGUUGUGAggCGCGGACa -3'
miRNA:   3'- aGCUCGgcgGCAACGCUaaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 146013 0.72 0.667763
Target:  5'- gCGGGuCCGCCGgcucgagcGCGggUCgACGGACg -3'
miRNA:   3'- aGCUC-GGCGGCaa------CGCuaAG-UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 155106 0.71 0.707981
Target:  5'- --aAGCCGCCGUcGCuucuaUCACGGGCg -3'
miRNA:   3'- agcUCGGCGGCAaCGcua--AGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 103904 0.71 0.711957
Target:  5'- gCGAGCCGCCGcggcGCGAcgaggagcgcgucgUCGCGGcGCg -3'
miRNA:   3'- aGCUCGGCGGCaa--CGCUa-------------AGUGCC-UG- -5'
7663 3' -55.6 NC_001973.1 + 911 0.71 0.717899
Target:  5'- cUCGAGCCGCCGauucuUUGCGucguaaACGG-Cg -3'
miRNA:   3'- -AGCUCGGCGGC-----AACGCuaag--UGCCuG- -5'
7663 3' -55.6 NC_001973.1 + 33665 0.7 0.756753
Target:  5'- uUCGAGCCGCacguaGUUGCGcuuGUUCGucGACa -3'
miRNA:   3'- -AGCUCGGCGg----CAACGC---UAAGUgcCUG- -5'
7663 3' -55.6 NC_001973.1 + 134992 0.69 0.793863
Target:  5'- cCGGGCCGUCGg-GCGGgagC-CGGGCa -3'
miRNA:   3'- aGCUCGGCGGCaaCGCUaa-GuGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 152375 0.69 0.793863
Target:  5'- gCGAGCCggacgGCCGgcGCGG---GCGGGCg -3'
miRNA:   3'- aGCUCGG-----CGGCaaCGCUaagUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 109501 0.69 0.806335
Target:  5'- aCGAacgccgccGCCGCCGUucgccgcuuggcucuUGCGcUUUugGGGCg -3'
miRNA:   3'- aGCU--------CGGCGGCA---------------ACGCuAAGugCCUG- -5'
7663 3' -55.6 NC_001973.1 + 42977 0.69 0.820211
Target:  5'- gCGAgauGCUGCCGUUGCGGagUUUGCGuGCg -3'
miRNA:   3'- aGCU---CGGCGGCAACGCU--AAGUGCcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.