miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7663 3' -55.6 NC_001973.1 + 911 0.71 0.717899
Target:  5'- cUCGAGCCGCCGauucuUUGCGucguaaACGG-Cg -3'
miRNA:   3'- -AGCUCGGCGGC-----AACGCuaag--UGCCuG- -5'
7663 3' -55.6 NC_001973.1 + 4654 0.68 0.868143
Target:  5'- gCGGG-CGCCGUcgGCGAgu--CGGACa -3'
miRNA:   3'- aGCUCgGCGGCAa-CGCUaaguGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 5747 0.73 0.586461
Target:  5'- aCGGGCCGCCGaaGCGGccCACGGcGCu -3'
miRNA:   3'- aGCUCGGCGGCaaCGCUaaGUGCC-UG- -5'
7663 3' -55.6 NC_001973.1 + 7400 0.68 0.844236
Target:  5'- cUCGAGgCGCCGaugUGCGuguaccuggucaaGUUCAaGGACu -3'
miRNA:   3'- -AGCUCgGCGGCa--ACGC-------------UAAGUgCCUG- -5'
7663 3' -55.6 NC_001973.1 + 8019 0.66 0.930903
Target:  5'- aUCGGGCCGCgGccGCGA--CACGcACa -3'
miRNA:   3'- -AGCUCGGCGgCaaCGCUaaGUGCcUG- -5'
7663 3' -55.6 NC_001973.1 + 8845 0.67 0.882507
Target:  5'- cCGcGCUGCUGgcGCGGcgaCACGGGCu -3'
miRNA:   3'- aGCuCGGCGGCaaCGCUaa-GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 17469 0.72 0.64643
Target:  5'- cUCGAGCaUGCCGUgcgccGCGAggucggcuucuauUUCGCGGAa -3'
miRNA:   3'- -AGCUCG-GCGGCAa----CGCU-------------AAGUGCCUg -5'
7663 3' -55.6 NC_001973.1 + 18336 0.66 0.940654
Target:  5'- gUCGgauGGCCGCCGgccagcUUGCGugccAUUCGCGcGCa -3'
miRNA:   3'- -AGC---UCGGCGGC------AACGC----UAAGUGCcUG- -5'
7663 3' -55.6 NC_001973.1 + 18625 0.76 0.441742
Target:  5'- aCGAGCCGCCGUU-CGAgccgUCcgacggcccgACGGGCa -3'
miRNA:   3'- aGCUCGGCGGCAAcGCUa---AG----------UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 21549 0.67 0.882507
Target:  5'- gUCGGGCgCGCCGUgguccCGGcgCGCGGGg -3'
miRNA:   3'- -AGCUCG-GCGGCAac---GCUaaGUGCCUg -5'
7663 3' -55.6 NC_001973.1 + 22735 0.66 0.940654
Target:  5'- gCGAGCCgcgGCCGUaucugUGCGAg--GgGGGCg -3'
miRNA:   3'- aGCUCGG---CGGCA-----ACGCUaagUgCCUG- -5'
7663 3' -55.6 NC_001973.1 + 29328 0.72 0.657615
Target:  5'- gUGAGCa--CGUUGUGAggCGCGGACa -3'
miRNA:   3'- aGCUCGgcgGCAACGCUaaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 30362 0.79 0.298242
Target:  5'- uUCGGGCCGCCGgcgcgGCGAcUCggguGCGGGCc -3'
miRNA:   3'- -AGCUCGGCGGCaa---CGCUaAG----UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 32566 0.78 0.348653
Target:  5'- cCGAcGCCGCCGUcggcucggcgcgcUGCGA--CACGGACg -3'
miRNA:   3'- aGCU-CGGCGGCA-------------ACGCUaaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 32740 0.66 0.925673
Target:  5'- uUCGGGUCGCgCGc-GCGAUUguugaacaucacCAUGGGCg -3'
miRNA:   3'- -AGCUCGGCG-GCaaCGCUAA------------GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 33665 0.7 0.756753
Target:  5'- uUCGAGCCGCacguaGUUGCGcuuGUUCGucGACa -3'
miRNA:   3'- -AGCUCGGCGg----CAACGC---UAAGUgcCUG- -5'
7663 3' -55.6 NC_001973.1 + 35836 0.75 0.488022
Target:  5'- -gGGGCCGCUGUggGCGAUcCggACGGACa -3'
miRNA:   3'- agCUCGGCGGCAa-CGCUAaG--UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 36340 0.67 0.906738
Target:  5'- gCGGGCCucGgCGUucaagagcaauaccUGCGGUaCGCGGACu -3'
miRNA:   3'- aGCUCGG--CgGCA--------------ACGCUAaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 38837 0.67 0.902393
Target:  5'- -gGAGgCGgCGgcgGCGAgggCGCGGGCg -3'
miRNA:   3'- agCUCgGCgGCaa-CGCUaa-GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 39416 0.68 0.852939
Target:  5'- gUCG-GCCGCgGUgagGCGcgUCGCguccaGGGCg -3'
miRNA:   3'- -AGCuCGGCGgCAa--CGCuaAGUG-----CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.