miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7665 3' -52.6 NC_001973.1 + 109387 0.65 0.986806
Target:  5'- cUCGUAggcgcggcgcacUUGcCUagGcGCCGGCGCGUCg -3'
miRNA:   3'- -AGCAUa-----------AACuGAagC-CGGUCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 121610 0.65 0.986644
Target:  5'- gCGUGUgauugucGAgcagcacuugcaguUUUUGGCCGacGCGCGCCg -3'
miRNA:   3'- aGCAUAaa-----CU--------------GAAGCCGGU--CGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 80450 0.66 0.985291
Target:  5'- aUCGcgGUcUGGCggCGGuCCGGCGCcagcucgGCCu -3'
miRNA:   3'- -AGCa-UAaACUGaaGCC-GGUCGCG-------CGG- -5'
7665 3' -52.6 NC_001973.1 + 67600 0.66 0.983835
Target:  5'- gUCGUucggUUGGCggcggagcuggugcCGGCCgcguccgagAGCGUGCCg -3'
miRNA:   3'- -AGCAua--AACUGaa------------GCCGG---------UCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 1009 0.66 0.983646
Target:  5'- gUCGU------UUUCGGgCGGCGCGUCg -3'
miRNA:   3'- -AGCAuaaacuGAAGCCgGUCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 4909 0.66 0.983646
Target:  5'- uUCGUuaucgUGACggaaacgUCGGCgGGCucguCGCCg -3'
miRNA:   3'- -AGCAuaa--ACUGa------AGCCGgUCGc---GCGG- -5'
7665 3' -52.6 NC_001973.1 + 89090 0.66 0.983646
Target:  5'- uUCGUcgUUGuCgucgUCGaGCUccgcgGGCGCGCUc -3'
miRNA:   3'- -AGCAuaAACuGa---AGC-CGG-----UCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 96874 0.66 0.983646
Target:  5'- aCGUGguggccgcgGAuCUgugcgCGGCgGGCGCGUCg -3'
miRNA:   3'- aGCAUaaa------CU-GAa----GCCGgUCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 59787 0.66 0.983646
Target:  5'- aUCGaacugcUGACgaucgUGGCgAGCGCGUCg -3'
miRNA:   3'- -AGCauaa--ACUGaa---GCCGgUCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 123287 0.66 0.983646
Target:  5'- cCGggca-GGCg-CGGCCAGCGCaCCg -3'
miRNA:   3'- aGCauaaaCUGaaGCCGGUCGCGcGG- -5'
7665 3' -52.6 NC_001973.1 + 120765 0.66 0.982872
Target:  5'- aCGUGUUccgcaagcugaccGGCUUCgagGGCguGCGCGCg -3'
miRNA:   3'- aGCAUAAa------------CUGAAG---CCGguCGCGCGg -5'
7665 3' -52.6 NC_001973.1 + 82310 0.66 0.98166
Target:  5'- aUGgcaggUGGCgcUGGCguGCGUGCCg -3'
miRNA:   3'- aGCauaa-ACUGaaGCCGguCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 68367 0.66 0.98166
Target:  5'- gUCGUuuugGAUgcCGGCCGGCaaguCGCCc -3'
miRNA:   3'- -AGCAuaaaCUGaaGCCGGUCGc---GCGG- -5'
7665 3' -52.6 NC_001973.1 + 62927 0.66 0.98166
Target:  5'- cCG-AUUcGACUcgGGCCGGCGuCGUCa -3'
miRNA:   3'- aGCaUAAaCUGAagCCGGUCGC-GCGG- -5'
7665 3' -52.6 NC_001973.1 + 77364 0.66 0.98166
Target:  5'- -------cGACg-CGGCC-GCGCGCCc -3'
miRNA:   3'- agcauaaaCUGaaGCCGGuCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 58945 0.66 0.98166
Target:  5'- gUCGUGUUcacgGGCUUCuuCCuGCGCGUg -3'
miRNA:   3'- -AGCAUAAa---CUGAAGccGGuCGCGCGg -5'
7665 3' -52.6 NC_001973.1 + 130308 0.66 0.979498
Target:  5'- aCGUAccUG-CUccaagaUCGGCaCGGCGCuGCCa -3'
miRNA:   3'- aGCAUaaACuGA------AGCCG-GUCGCG-CGG- -5'
7665 3' -52.6 NC_001973.1 + 132604 0.66 0.979498
Target:  5'- uUCGUGUacaUGGCgcuggaGGCgAGCGCggaGCCg -3'
miRNA:   3'- -AGCAUAa--ACUGaag---CCGgUCGCG---CGG- -5'
7665 3' -52.6 NC_001973.1 + 77011 0.66 0.979498
Target:  5'- cUCGUcg--GGCggCGG-CGGCGCGCg -3'
miRNA:   3'- -AGCAuaaaCUGaaGCCgGUCGCGCGg -5'
7665 3' -52.6 NC_001973.1 + 99404 0.66 0.977152
Target:  5'- cCGUAgUUG---UUGGCgAGCGCGUCa -3'
miRNA:   3'- aGCAUaAACugaAGCCGgUCGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.