miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7665 5' -56.6 NC_001973.1 + 32543 0.66 0.894164
Target:  5'- --cGCGAGCucggcgaucgccgccGCCGACGCCGc-CGUCg -3'
miRNA:   3'- aacUGCUCG---------------UGGCUGCGGUucGCAGa -5'
7665 5' -56.6 NC_001973.1 + 39445 0.66 0.891495
Target:  5'- -gGGCGA-CGCCGAUGCCcAGC-UCg -3'
miRNA:   3'- aaCUGCUcGUGGCUGCGGuUCGcAGa -5'
7665 5' -56.6 NC_001973.1 + 65620 0.66 0.884662
Target:  5'- --aGCGAcGCGCUaGCGCCGAGCGcgCUc -3'
miRNA:   3'- aacUGCU-CGUGGcUGCGGUUCGCa-GA- -5'
7665 5' -56.6 NC_001973.1 + 65766 0.66 0.884662
Target:  5'- gUUGACGAuGCgcauGCUGACGCCcgacGCGUUc -3'
miRNA:   3'- -AACUGCU-CG----UGGCUGCGGuu--CGCAGa -5'
7665 5' -56.6 NC_001973.1 + 103923 0.66 0.883967
Target:  5'- -cGAgGAGCGCgucgucgCGGCGCgGGGCGUg- -3'
miRNA:   3'- aaCUgCUCGUG-------GCUGCGgUUCGCAga -5'
7665 5' -56.6 NC_001973.1 + 52713 0.66 0.877605
Target:  5'- -aGuCGAGcCGCCGcagcucgaGCGCCAGGCGgcgCg -3'
miRNA:   3'- aaCuGCUC-GUGGC--------UGCGGUUCGCa--Ga -5'
7665 5' -56.6 NC_001973.1 + 83082 0.66 0.877605
Target:  5'- -cGGCGAGCGgcggCGGCGCCGucGCGcUCa -3'
miRNA:   3'- aaCUGCUCGUg---GCUGCGGUu-CGC-AGa -5'
7665 5' -56.6 NC_001973.1 + 109549 0.66 0.877605
Target:  5'- --cGCGAGCcgcgcgaacGCCGGCGCgGGGCGg-- -3'
miRNA:   3'- aacUGCUCG---------UGGCUGCGgUUCGCaga -5'
7665 5' -56.6 NC_001973.1 + 56194 0.66 0.875445
Target:  5'- -cGACGuagucgcuuucgucGGCGUCGGCGCCGGGCG-Cg -3'
miRNA:   3'- aaCUGC--------------UCGUGGCUGCGGUUCGCaGa -5'
7665 5' -56.6 NC_001973.1 + 119377 0.66 0.870328
Target:  5'- -cGugGAGCgauugaacaagGCCGugGUgcaaaCGGGCGUCg -3'
miRNA:   3'- aaCugCUCG-----------UGGCugCG-----GUUCGCAGa -5'
7665 5' -56.6 NC_001973.1 + 73902 0.66 0.870328
Target:  5'- cUGACGuGCGgCGACGC-GAGCGa-- -3'
miRNA:   3'- aACUGCuCGUgGCUGCGgUUCGCaga -5'
7665 5' -56.6 NC_001973.1 + 80458 0.66 0.870328
Target:  5'- cUGGCGGcGguCCGGCGCCAgcucGGCcucGUCg -3'
miRNA:   3'- aACUGCU-CguGGCUGCGGU----UCG---CAGa -5'
7665 5' -56.6 NC_001973.1 + 107394 0.66 0.870328
Target:  5'- -cGACGAGCcggcgauuaGCU-ACGCCAAGCGa-- -3'
miRNA:   3'- aaCUGCUCG---------UGGcUGCGGUUCGCaga -5'
7665 5' -56.6 NC_001973.1 + 25789 0.66 0.869588
Target:  5'- cUUGACGcGCcgcuccACCGGCGCgcggcacaccacgCAAGCGUCc -3'
miRNA:   3'- -AACUGCuCG------UGGCUGCG-------------GUUCGCAGa -5'
7665 5' -56.6 NC_001973.1 + 45907 0.66 0.862837
Target:  5'- -aGACG-GCACCGACGUguucgacaUGAGCGcCg -3'
miRNA:   3'- aaCUGCuCGUGGCUGCG--------GUUCGCaGa -5'
7665 5' -56.6 NC_001973.1 + 121224 0.66 0.862076
Target:  5'- --aGCGAGCGCCacgcggcGGCGCgGcGCGUCg -3'
miRNA:   3'- aacUGCUCGUGG-------CUGCGgUuCGCAGa -5'
7665 5' -56.6 NC_001973.1 + 93744 0.66 0.855136
Target:  5'- -aGGCGAGCcgcCCGGCGaCCAggAGCGg-- -3'
miRNA:   3'- aaCUGCUCGu--GGCUGC-GGU--UCGCaga -5'
7665 5' -56.6 NC_001973.1 + 68013 0.66 0.855136
Target:  5'- gUUGuCGAG-ACUGGCGCCc-GCGUCg -3'
miRNA:   3'- -AACuGCUCgUGGCUGCGGuuCGCAGa -5'
7665 5' -56.6 NC_001973.1 + 36882 0.66 0.855136
Target:  5'- -cGACGGGCgcGCCGAguucaccgcCGCuCAAGuCGUCg -3'
miRNA:   3'- aaCUGCUCG--UGGCU---------GCG-GUUC-GCAGa -5'
7665 5' -56.6 NC_001973.1 + 140057 0.66 0.855136
Target:  5'- -cGACGAGaccauCGCgGACGCgcAGCGUCa -3'
miRNA:   3'- aaCUGCUC-----GUGgCUGCGguUCGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.