Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7666 | 3' | -59 | NC_001973.1 | + | 138458 | 1.11 | 0.001201 |
Target: 5'- gUCAGAUGCUCCCGACACCCGGCCACCu -3' miRNA: 3'- -AGUCUACGAGGGCUGUGGGCCGGUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 138752 | 0.74 | 0.359785 |
Target: 5'- aCAGGUcCUCguCCGuGCACCCGGCCGCg -3' miRNA: 3'- aGUCUAcGAG--GGC-UGUGGGCCGGUGg -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 7255 | 0.74 | 0.359785 |
Target: 5'- gCAGAUGCgcagcgggCUCGGCGCgCGGCgCGCCc -3' miRNA: 3'- aGUCUACGa-------GGGCUGUGgGCCG-GUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 35243 | 0.74 | 0.391549 |
Target: 5'- -gAGAUGUUCCgcuggacgauCGACACCUGGUCGCg -3' miRNA: 3'- agUCUACGAGG----------GCUGUGGGCCGGUGg -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 62221 | 0.74 | 0.391549 |
Target: 5'- aUCAGAgagGCguucgacacgCCCG-CACUCGGCCACa -3' miRNA: 3'- -AGUCUa--CGa---------GGGCuGUGGGCCGGUGg -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 71733 | 0.74 | 0.391549 |
Target: 5'- -----cGCcCCCGGCGCCCgcGGCCGCCc -3' miRNA: 3'- agucuaCGaGGGCUGUGGG--CCGGUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 14106 | 0.73 | 0.415692 |
Target: 5'- uUCAGAUagccGCUCCacggauaCGGCcCCCGGuCCGCCg -3' miRNA: 3'- -AGUCUA----CGAGG-------GCUGuGGGCC-GGUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 21872 | 0.73 | 0.415692 |
Target: 5'- aUCaAGAUGaUCCacgacgaCGGCACCuCGGCCACCu -3' miRNA: 3'- -AG-UCUACgAGG-------GCUGUGG-GCCGGUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 3485 | 0.71 | 0.534884 |
Target: 5'- aCGGucaGCUCCacgCGGCGCuuGGCCACg -3' miRNA: 3'- aGUCua-CGAGG---GCUGUGggCCGGUGg -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 21306 | 0.7 | 0.563011 |
Target: 5'- gUCGGGcuUGCgcaUCCCGAUgaugccgcacgcgAgCCGGCCGCCc -3' miRNA: 3'- -AGUCU--ACG---AGGGCUG-------------UgGGCCGGUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 56310 | 0.7 | 0.579686 |
Target: 5'- cCGGAUucaaaguuaaacucGCUCUCGGCGCCgcgcucgCGGCCGCg -3' miRNA: 3'- aGUCUA--------------CGAGGGCUGUGG-------GCCGGUGg -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 108306 | 0.7 | 0.592507 |
Target: 5'- cCAGGUGCUCUgCGACgagauggccauuuGCgCGuGCCGCCa -3' miRNA: 3'- aGUCUACGAGG-GCUG-------------UGgGC-CGGUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 81893 | 0.7 | 0.603392 |
Target: 5'- gUCGGccGCgUCCCGACGCaCCa-CCACCg -3' miRNA: 3'- -AGUCuaCG-AGGGCUGUG-GGccGGUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 63635 | 0.7 | 0.61331 |
Target: 5'- aUCGGccGCguggggCGGCGCgCCGGCCGCCu -3' miRNA: 3'- -AGUCuaCGagg---GCUGUG-GGCCGGUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 135664 | 0.69 | 0.623241 |
Target: 5'- gCAGGUGUUggCCGugGCgCUGGCCugCg -3' miRNA: 3'- aGUCUACGAg-GGCugUG-GGCCGGugG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 160100 | 0.69 | 0.623241 |
Target: 5'- cCAaGUGCUUuuGGCGCuuGGCCugUu -3' miRNA: 3'- aGUcUACGAGggCUGUGggCCGGugG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 138594 | 0.69 | 0.643114 |
Target: 5'- cCGGAUGCUUgacgagcaCCGACGCCaagcgucugcaCGGCUgcGCCa -3' miRNA: 3'- aGUCUACGAG--------GGCUGUGG-----------GCCGG--UGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 28412 | 0.69 | 0.643114 |
Target: 5'- gUCAGugaGCgcgCuuGGCgGCCgCGGCCGCCg -3' miRNA: 3'- -AGUCua-CGa--GggCUG-UGG-GCCGGUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 121673 | 0.69 | 0.643114 |
Target: 5'- -----cGCUCgCGGCGCCCGGaUACCg -3' miRNA: 3'- agucuaCGAGgGCUGUGGGCCgGUGG- -5' |
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7666 | 3' | -59 | NC_001973.1 | + | 45218 | 0.69 | 0.662954 |
Target: 5'- --cGAUGCgggCCgCGuGCugCCGGcCCGCCa -3' miRNA: 3'- aguCUACGa--GG-GC-UGugGGCC-GGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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