miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7666 3' -59 NC_001973.1 + 2593 0.68 0.672843
Target:  5'- uUCAGAcuuUGCgaccgCCCGAagaaaacuaaGCgCCGGCCGCg -3'
miRNA:   3'- -AGUCU---ACGa----GGGCUg---------UG-GGCCGGUGg -5'
7666 3' -59 NC_001973.1 + 3485 0.71 0.534884
Target:  5'- aCGGucaGCUCCacgCGGCGCuuGGCCACg -3'
miRNA:   3'- aGUCua-CGAGG---GCUGUGggCCGGUGg -5'
7666 3' -59 NC_001973.1 + 7255 0.74 0.359785
Target:  5'- gCAGAUGCgcagcgggCUCGGCGCgCGGCgCGCCc -3'
miRNA:   3'- aGUCUACGa-------GGGCUGUGgGCCG-GUGG- -5'
7666 3' -59 NC_001973.1 + 8538 0.66 0.812794
Target:  5'- -----gGCUCCaagaGACugCaGGCCGCCu -3'
miRNA:   3'- agucuaCGAGGg---CUGugGgCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 14106 0.73 0.415692
Target:  5'- uUCAGAUagccGCUCCacggauaCGGCcCCCGGuCCGCCg -3'
miRNA:   3'- -AGUCUA----CGAGG-------GCUGuGGGCC-GGUGG- -5'
7666 3' -59 NC_001973.1 + 21306 0.7 0.563011
Target:  5'- gUCGGGcuUGCgcaUCCCGAUgaugccgcacgcgAgCCGGCCGCCc -3'
miRNA:   3'- -AGUCU--ACG---AGGGCUG-------------UgGGCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 21872 0.73 0.415692
Target:  5'- aUCaAGAUGaUCCacgacgaCGGCACCuCGGCCACCu -3'
miRNA:   3'- -AG-UCUACgAGG-------GCUGUGG-GCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 25799 0.67 0.740732
Target:  5'- -----cGCUCCacCGGCGCgCGGCaCACCa -3'
miRNA:   3'- agucuaCGAGG--GCUGUGgGCCG-GUGG- -5'
7666 3' -59 NC_001973.1 + 28412 0.69 0.643114
Target:  5'- gUCAGugaGCgcgCuuGGCgGCCgCGGCCGCCg -3'
miRNA:   3'- -AGUCua-CGa--GggCUG-UGG-GCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 30383 0.66 0.821189
Target:  5'- cUCGGGUGCgggCCGGCGCggCGGCgGCg -3'
miRNA:   3'- -AGUCUACGag-GGCUGUGg-GCCGgUGg -5'
7666 3' -59 NC_001973.1 + 32394 0.68 0.70229
Target:  5'- aCGGGgcUGCUCCaCGGCgacaGCCCGGCgaaCACg -3'
miRNA:   3'- aGUCU--ACGAGG-GCUG----UGGGCCG---GUGg -5'
7666 3' -59 NC_001973.1 + 35243 0.74 0.391549
Target:  5'- -gAGAUGUUCCgcuggacgauCGACACCUGGUCGCg -3'
miRNA:   3'- agUCUACGAGG----------GCUGUGGGCCGGUGg -5'
7666 3' -59 NC_001973.1 + 39853 0.66 0.795548
Target:  5'- gCAGAUGCagaCCGcccaaauacugcACGCUCGGCggCACCg -3'
miRNA:   3'- aGUCUACGag-GGC------------UGUGGGCCG--GUGG- -5'
7666 3' -59 NC_001973.1 + 41059 0.67 0.768656
Target:  5'- aUCGGGcuUGaaCCCGAUcgacCCCGGCCGgCg -3'
miRNA:   3'- -AGUCU--ACgaGGGCUGu---GGGCCGGUgG- -5'
7666 3' -59 NC_001973.1 + 43931 0.66 0.829422
Target:  5'- -aAGAcGCcCUCGACGgCCgcgaaGGCCACCa -3'
miRNA:   3'- agUCUaCGaGGGCUGUgGG-----CCGGUGG- -5'
7666 3' -59 NC_001973.1 + 44149 0.68 0.70229
Target:  5'- gUAGAaGCa-CCG-CGCCuCGGCCACCu -3'
miRNA:   3'- aGUCUaCGagGGCuGUGG-GCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 45218 0.69 0.662954
Target:  5'- --cGAUGCgggCCgCGuGCugCCGGcCCGCCa -3'
miRNA:   3'- aguCUACGa--GG-GC-UGugGGCC-GGUGG- -5'
7666 3' -59 NC_001973.1 + 56310 0.7 0.579686
Target:  5'- cCGGAUucaaaguuaaacucGCUCUCGGCGCCgcgcucgCGGCCGCg -3'
miRNA:   3'- aGUCUA--------------CGAGGGCUGUGG-------GCCGGUGg -5'
7666 3' -59 NC_001973.1 + 59728 0.68 0.672843
Target:  5'- uUCGGcUGCUgUgCGACAa-CGGCCACCg -3'
miRNA:   3'- -AGUCuACGA-GgGCUGUggGCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 62221 0.74 0.391549
Target:  5'- aUCAGAgagGCguucgacacgCCCG-CACUCGGCCACa -3'
miRNA:   3'- -AGUCUa--CGa---------GGGCuGUGGGCCGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.