miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7666 5' -49.8 NC_001973.1 + 144338 0.67 0.99462
Target:  5'- cCCGGg--CAAgcGGaUGCGCGAGgacGAGGACg -3'
miRNA:   3'- -GGCCgaaGUU--CC-ACGCGCUU---UUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 144251 0.66 0.997571
Target:  5'- gCUGGCggaCGAGG-GCGCguucgucGAAAAGAAa -3'
miRNA:   3'- -GGCCGaa-GUUCCaCGCG-------CUUUUCUUg -5'
7666 5' -49.8 NC_001973.1 + 138497 1.13 0.006937
Target:  5'- aCCGGCUUCAAGGUGCGCGAAAAGAACu -3'
miRNA:   3'- -GGCCGAAGUUCCACGCGCUUUUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 136705 0.79 0.581113
Target:  5'- -gGGCgccuuuugggCGAGGaUGCGCGAAAGGAGCg -3'
miRNA:   3'- ggCCGaa--------GUUCC-ACGCGCUUUUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 135854 0.68 0.990481
Target:  5'- uCUGGag-CGAGGUGUGCGucGGGuGCg -3'
miRNA:   3'- -GGCCgaaGUUCCACGCGCuuUUCuUG- -5'
7666 5' -49.8 NC_001973.1 + 132848 0.69 0.981981
Target:  5'- gCCGGCcaggAAGGaGCGCGAcauguccucgggaAAGGAGCg -3'
miRNA:   3'- -GGCCGaag-UUCCaCGCGCU-------------UUUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 120782 0.77 0.728644
Target:  5'- aCCGGCUUCGAGGgcgugcGCGCGcuGcuGACg -3'
miRNA:   3'- -GGCCGAAGUUCCa-----CGCGCuuUucUUG- -5'
7666 5' -49.8 NC_001973.1 + 118497 0.7 0.972348
Target:  5'- gCGGCgacUCGccAGGcccUGCGCGAAAucGGGACc -3'
miRNA:   3'- gGCCGa--AGU--UCC---ACGCGCUUU--UCUUG- -5'
7666 5' -49.8 NC_001973.1 + 111075 0.66 0.997613
Target:  5'- gCGGCgccCGAcguGGgccGCGuCGAGGAGAGCg -3'
miRNA:   3'- gGCCGaa-GUU---CCa--CGC-GCUUUUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 109309 0.67 0.99462
Target:  5'- gUCGGggUCGAGGagcgcgucgcGCGCGAAccGGAACa -3'
miRNA:   3'- -GGCCgaAGUUCCa---------CGCGCUUu-UCUUG- -5'
7666 5' -49.8 NC_001973.1 + 108257 0.68 0.987636
Target:  5'- aCGGCUgcc-GGcGCGCGGAGAcGGACc -3'
miRNA:   3'- gGCCGAaguuCCaCGCGCUUUU-CUUG- -5'
7666 5' -49.8 NC_001973.1 + 106962 0.66 0.998001
Target:  5'- gCCgGGCgcgcUCGGcGUGCGCGcgcugcAGAGGAACa -3'
miRNA:   3'- -GG-CCGa---AGUUcCACGCGC------UUUUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 104601 0.74 0.842019
Target:  5'- -gGGCUUCGucggcGGcGCGCGAAAAGAcgACg -3'
miRNA:   3'- ggCCGAAGUu----CCaCGCGCUUUUCU--UG- -5'
7666 5' -49.8 NC_001973.1 + 99083 0.71 0.94199
Target:  5'- gUCGGUUUCGAGGUGUccGCGAAc----- -3'
miRNA:   3'- -GGCCGAAGUUCCACG--CGCUUuucuug -5'
7666 5' -49.8 NC_001973.1 + 95016 0.7 0.969371
Target:  5'- aCGGCUUCGugccGaUGUGCGGcgGGGACg -3'
miRNA:   3'- gGCCGAAGUu---CcACGCGCUuuUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 93939 0.66 0.996649
Target:  5'- gCUGGaCgagcgCGAGcUGCGCGAGAAGuACg -3'
miRNA:   3'- -GGCC-Gaa---GUUCcACGCGCUUUUCuUG- -5'
7666 5' -49.8 NC_001973.1 + 93858 0.71 0.955181
Target:  5'- gUGGCUg-AAGGUGCGCau--GGAGCa -3'
miRNA:   3'- gGCCGAagUUCCACGCGcuuuUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 91472 0.72 0.920833
Target:  5'- aCGGgaUUggGGcaccGCGCGAGAAGAAa -3'
miRNA:   3'- gGCCgaAGuuCCa---CGCGCUUUUCUUg -5'
7666 5' -49.8 NC_001973.1 + 84256 0.66 0.997613
Target:  5'- gCGGCg--GAGGUgcucgcgcugagGCGCGAcaaAGAGGACc -3'
miRNA:   3'- gGCCGaagUUCCA------------CGCGCU---UUUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 84008 0.66 0.998334
Target:  5'- cCCGGCUg-AAGGcGCagaGCGAGcuGAACc -3'
miRNA:   3'- -GGCCGAagUUCCaCG---CGCUUuuCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.