Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 7667 | 3' | -61.8 | NC_001973.1 | + | 150044 | 0.72 | 0.342697 |
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Target: 5'- --gGGCCGGGCGcgGCCGAA-GGCuGGa -3' miRNA: 3'- ccgCCGGCUCGCa-CGGCUUcCCGuCC- -5' |
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| 7667 | 3' | -61.8 | NC_001973.1 | + | 27863 | 0.72 | 0.335463 |
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Target: 5'- uGGCGGCC--GCG-GCCGcGGGcGCGGGc -3' miRNA: 3'- -CCGCCGGcuCGCaCGGCuUCC-CGUCC- -5' |
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| 7667 | 3' | -61.8 | NC_001973.1 | + | 36321 | 0.73 | 0.328342 |
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Target: 5'- cGCGGCCGAcGCG-GCCGAcgcGGGCcucGGc -3' miRNA: 3'- cCGCCGGCU-CGCaCGGCUu--CCCGu--CC- -5' |
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| 7667 | 3' | -61.8 | NC_001973.1 | + | 109549 | 0.73 | 0.307653 |
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Target: 5'- cGCGaGCCGcGCGaacGCCGGcgcGGGGCGGGu -3' miRNA: 3'- cCGC-CGGCuCGCa--CGGCU---UCCCGUCC- -5' |
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| 7667 | 3' | -61.8 | NC_001973.1 | + | 61091 | 0.73 | 0.294422 |
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Target: 5'- gGGCaGGCCGcGCG-GCCGAcggagcagcGGcGGCGGGg -3' miRNA: 3'- -CCG-CCGGCuCGCaCGGCU---------UC-CCGUCC- -5' |
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| 7667 | 3' | -61.8 | NC_001973.1 | + | 47693 | 0.78 | 0.160891 |
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Target: 5'- uGCGGCCGuaCGUGCCGGGcGGCAGGc -3' miRNA: 3'- cCGCCGGCucGCACGGCUUcCCGUCC- -5' |
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| 7667 | 3' | -61.8 | NC_001973.1 | + | 144741 | 0.78 | 0.157043 |
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Target: 5'- cGGCGGCgGAgGCG-GCCGAGGaGGCGGc -3' miRNA: 3'- -CCGCCGgCU-CGCaCGGCUUC-CCGUCc -5' |
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| 7667 | 3' | -61.8 | NC_001973.1 | + | 6511 | 0.79 | 0.129146 |
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Target: 5'- gGGCGGCgCGGGCGUGCCGAcgauuuuGcGGCuGGu -3' miRNA: 3'- -CCGCCG-GCUCGCACGGCUu------C-CCGuCC- -5' |
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| 7667 | 3' | -61.8 | NC_001973.1 | + | 138359 | 1.12 | 0.00063 |
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Target: 5'- aGGCGGCCGAGCGUGCCGAAGGGCAGGg -3' miRNA: 3'- -CCGCCGGCUCGCACGGCUUCCCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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