miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7667 3' -61.8 NC_001973.1 + 70359 0.66 0.681953
Target:  5'- -aCGGgCGAGCG-GCCGcuGGGUcGGu -3'
miRNA:   3'- ccGCCgGCUCGCaCGGCuuCCCGuCC- -5'
7667 3' -61.8 NC_001973.1 + 75583 0.68 0.546729
Target:  5'- aGCGGaCgGAGCGgGCgGAGcGGGCGGa -3'
miRNA:   3'- cCGCC-GgCUCGCaCGgCUU-CCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 83942 0.66 0.681953
Target:  5'- cGGCGcGCCGcucggaggcgGGCGcGUCGAGGcaGCAGGc -3'
miRNA:   3'- -CCGC-CGGC----------UCGCaCGGCUUCc-CGUCC- -5'
7667 3' -61.8 NC_001973.1 + 84215 0.66 0.71064
Target:  5'- aGGcCGaGUCGAGCG-GCCugacgaGGAGGuuGCAGGa -3'
miRNA:   3'- -CC-GC-CGGCUCGCaCGG------CUUCC--CGUCC- -5'
7667 3' -61.8 NC_001973.1 + 93849 0.68 0.546729
Target:  5'- cGUGGCCGuGUG-GCUGAAGGuGCGcauGGa -3'
miRNA:   3'- cCGCCGGCuCGCaCGGCUUCC-CGU---CC- -5'
7667 3' -61.8 NC_001973.1 + 94726 0.66 0.680989
Target:  5'- aGGCGGCCGGcaagcgcgcguccGUGUGCgucuCGAGcGGCGGc -3'
miRNA:   3'- -CCGCCGGCU-------------CGCACG----GCUUcCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 95145 0.71 0.421054
Target:  5'- gGGCGGCCGuGCagaaGCCGcaaAAGGGCGu- -3'
miRNA:   3'- -CCGCCGGCuCGca--CGGC---UUCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 96877 0.66 0.691562
Target:  5'- uGGUGGCCGcGGaucuGUGCgCGgcGGGCGcgucGGa -3'
miRNA:   3'- -CCGCCGGC-UCg---CACG-GCuuCCCGU----CC- -5'
7667 3' -61.8 NC_001973.1 + 103938 0.7 0.472953
Target:  5'- cGCGGCgCgGGGCGUGCCGucGcGGCGc- -3'
miRNA:   3'- cCGCCG-G-CUCGCACGGCuuC-CCGUcc -5'
7667 3' -61.8 NC_001973.1 + 104265 0.69 0.527881
Target:  5'- cGGCGGC--GGCGccGCCGccGGGCuGGu -3'
miRNA:   3'- -CCGCCGgcUCGCa-CGGCuuCCCGuCC- -5'
7667 3' -61.8 NC_001973.1 + 109549 0.73 0.307653
Target:  5'- cGCGaGCCGcGCGaacGCCGGcgcGGGGCGGGu -3'
miRNA:   3'- cCGC-CGGCuCGCa--CGGCU---UCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 118039 0.66 0.701127
Target:  5'- gGGC-GCCGuuCGUGCUGcAcuGGCAGGa -3'
miRNA:   3'- -CCGcCGGCucGCACGGC-UucCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 123001 0.68 0.546729
Target:  5'- cGCGGCCagcauGAGCGccUCGAAGGGCGc- -3'
miRNA:   3'- cCGCCGG-----CUCGCacGGCUUCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 124703 0.69 0.527881
Target:  5'- cGGUGGCCGAGC-UGUac---GGCAGGu -3'
miRNA:   3'- -CCGCCGGCUCGcACGgcuucCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 132430 0.69 0.500084
Target:  5'- aGCGaGgCGAGCGUGgUGGAGgcgccGGCGGGg -3'
miRNA:   3'- cCGC-CgGCUCGCACgGCUUC-----CCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 132535 0.66 0.672306
Target:  5'- aGGCcGCCGGGCGcGgCGgcGGGCu-- -3'
miRNA:   3'- -CCGcCGGCUCGCaCgGCuuCCCGucc -5'
7667 3' -61.8 NC_001973.1 + 133283 0.68 0.585008
Target:  5'- cGCGGCCGAgaacGCG-GCCGGc-GGCGGc -3'
miRNA:   3'- cCGCCGGCU----CGCaCGGCUucCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 134976 0.69 0.509281
Target:  5'- cGGCGaUCGAGUacguccggGCCGucGGGCGGGa -3'
miRNA:   3'- -CCGCcGGCUCGca------CGGCuuCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 137254 0.68 0.565785
Target:  5'- gGGCuuucgaGCCGAGUGUGCgGc--GGCGGGg -3'
miRNA:   3'- -CCGc-----CGGCUCGCACGgCuucCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 138359 1.12 0.00063
Target:  5'- aGGCGGCCGAGCGUGCCGAAGGGCAGGg -3'
miRNA:   3'- -CCGCCGGCUCGCACGGCUUCCCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.