miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7667 3' -61.8 NC_001973.1 + 6511 0.79 0.129146
Target:  5'- gGGCGGCgCGGGCGUGCCGAcgauuuuGcGGCuGGu -3'
miRNA:   3'- -CCGCCG-GCUCGCACGGCUu------C-CCGuCC- -5'
7667 3' -61.8 NC_001973.1 + 10712 0.69 0.537276
Target:  5'- gGGCGGCUcgauGAGCGgcaccgucgaguUGUCGAAGcgcaucagcGGCGGGu -3'
miRNA:   3'- -CCGCCGG----CUCGC------------ACGGCUUC---------CCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 14356 0.67 0.643218
Target:  5'- cGUGGUCG-GCGUgGUCGAcGGGGCGcGGc -3'
miRNA:   3'- cCGCCGGCuCGCA-CGGCU-UCCCGU-CC- -5'
7667 3' -61.8 NC_001973.1 + 16914 0.67 0.633497
Target:  5'- cGGCGGCCucucGGCGgcgcaGCaaaaaGAAGGGCGu- -3'
miRNA:   3'- -CCGCCGGc---UCGCa----CGg----CUUCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 22741 0.67 0.623775
Target:  5'- cGCGGCCGuaucUGUGCgaGggGGGCGa- -3'
miRNA:   3'- cCGCCGGCuc--GCACGg-CuuCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 27863 0.72 0.335463
Target:  5'- uGGCGGCC--GCG-GCCGcGGGcGCGGGc -3'
miRNA:   3'- -CCGCCGGcuCGCaCGGCuUCC-CGUCC- -5'
7667 3' -61.8 NC_001973.1 + 28294 0.68 0.575378
Target:  5'- uGGCGGCCGAGC--GCCGcgucGGcGCAa- -3'
miRNA:   3'- -CCGCCGGCUCGcaCGGCuu--CC-CGUcc -5'
7667 3' -61.8 NC_001973.1 + 28949 0.67 0.633497
Target:  5'- gGGCGGC--AGCGgggGCCGGcagucGGGCGGc -3'
miRNA:   3'- -CCGCCGgcUCGCa--CGGCUu----CCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 29208 0.68 0.546729
Target:  5'- uGGauGCCGuucGCGaUGuuGgcGGGCAGGc -3'
miRNA:   3'- -CCgcCGGCu--CGC-ACggCuuCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 31025 0.66 0.71064
Target:  5'- cGGCGcucaugaucuGCuCGAGCGUcugaacGCCGAcggcGGGCAGc -3'
miRNA:   3'- -CCGC----------CG-GCUCGCA------CGGCUu---CCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 36321 0.73 0.328342
Target:  5'- cGCGGCCGAcGCG-GCCGAcgcGGGCcucGGc -3'
miRNA:   3'- cCGCCGGCU-CGCaCGGCUu--CCCGu--CC- -5'
7667 3' -61.8 NC_001973.1 + 37757 0.67 0.633497
Target:  5'- uGGCGGCgGcAGUGUaGaUCGggGGGCGc- -3'
miRNA:   3'- -CCGCCGgC-UCGCA-C-GGCuuCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 38839 0.66 0.691562
Target:  5'- aGGCGGC--GGCG-G-CGAGGGcGCGGGc -3'
miRNA:   3'- -CCGCCGgcUCGCaCgGCUUCC-CGUCC- -5'
7667 3' -61.8 NC_001973.1 + 47693 0.78 0.160891
Target:  5'- uGCGGCCGuaCGUGCCGGGcGGCAGGc -3'
miRNA:   3'- cCGCCGGCucGCACGGCUUcCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 50088 0.67 0.643218
Target:  5'- gGGCGGC--GGCGccaCGGAGGGCGGcGg -3'
miRNA:   3'- -CCGCCGgcUCGCacgGCUUCCCGUC-C- -5'
7667 3' -61.8 NC_001973.1 + 53858 0.68 0.556233
Target:  5'- cGGCGGCgGcGGCGccGCCGAGcGcGGCGGc -3'
miRNA:   3'- -CCGCCGgC-UCGCa-CGGCUU-C-CCGUCc -5'
7667 3' -61.8 NC_001973.1 + 56461 0.66 0.71064
Target:  5'- gGGCgGGCUcGGCGccaaGCuCGGgcGGGGCGGGc -3'
miRNA:   3'- -CCG-CCGGcUCGCa---CG-GCU--UCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 56515 0.66 0.71064
Target:  5'- gGGCgGGCUcGGCGccaaGCuCGGgcGGGGCGGGc -3'
miRNA:   3'- -CCG-CCGGcUCGCa---CG-GCU--UCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 61091 0.73 0.294422
Target:  5'- gGGCaGGCCGcGCG-GCCGAcggagcagcGGcGGCGGGg -3'
miRNA:   3'- -CCG-CCGGCuCGCaCGGCU---------UC-CCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 67627 0.68 0.556233
Target:  5'- -cCGGCCgcguccgaGAGCGUGCCGAGGaacacGCAGu -3'
miRNA:   3'- ccGCCGG--------CUCGCACGGCUUCc----CGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.