miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7667 3' -61.8 NC_001973.1 + 138359 1.12 0.00063
Target:  5'- aGGCGGCCGAGCGUGCCGAAGGGCAGGg -3'
miRNA:   3'- -CCGCCGGCUCGCACGGCUUCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 6511 0.79 0.129146
Target:  5'- gGGCGGCgCGGGCGUGCCGAcgauuuuGcGGCuGGu -3'
miRNA:   3'- -CCGCCG-GCUCGCACGGCUu------C-CCGuCC- -5'
7667 3' -61.8 NC_001973.1 + 144741 0.78 0.157043
Target:  5'- cGGCGGCgGAgGCG-GCCGAGGaGGCGGc -3'
miRNA:   3'- -CCGCCGgCU-CGCaCGGCUUC-CCGUCc -5'
7667 3' -61.8 NC_001973.1 + 47693 0.78 0.160891
Target:  5'- uGCGGCCGuaCGUGCCGGGcGGCAGGc -3'
miRNA:   3'- cCGCCGGCucGCACGGCUUcCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 61091 0.73 0.294422
Target:  5'- gGGCaGGCCGcGCG-GCCGAcggagcagcGGcGGCGGGg -3'
miRNA:   3'- -CCG-CCGGCuCGCaCGGCU---------UC-CCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 109549 0.73 0.307653
Target:  5'- cGCGaGCCGcGCGaacGCCGGcgcGGGGCGGGu -3'
miRNA:   3'- cCGC-CGGCuCGCa--CGGCU---UCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 36321 0.73 0.328342
Target:  5'- cGCGGCCGAcGCG-GCCGAcgcGGGCcucGGc -3'
miRNA:   3'- cCGCCGGCU-CGCaCGGCUu--CCCGu--CC- -5'
7667 3' -61.8 NC_001973.1 + 27863 0.72 0.335463
Target:  5'- uGGCGGCC--GCG-GCCGcGGGcGCGGGc -3'
miRNA:   3'- -CCGCCGGcuCGCaCGGCuUCC-CGUCC- -5'
7667 3' -61.8 NC_001973.1 + 150044 0.72 0.342697
Target:  5'- --gGGCCGGGCGcgGCCGAA-GGCuGGa -3'
miRNA:   3'- ccgCCGGCUCGCa-CGGCUUcCCGuCC- -5'
7667 3' -61.8 NC_001973.1 + 146070 0.71 0.388424
Target:  5'- cGGC-GCCGAGcCG-GCuCGGGcGGGCGGGg -3'
miRNA:   3'- -CCGcCGGCUC-GCaCG-GCUU-CCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 95145 0.71 0.421054
Target:  5'- gGGCGGCCGuGCagaaGCCGcaaAAGGGCGu- -3'
miRNA:   3'- -CCGCCGGCuCGca--CGGC---UUCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 103938 0.7 0.472953
Target:  5'- cGCGGCgCgGGGCGUGCCGucGcGGCGc- -3'
miRNA:   3'- cCGCCG-G-CUCGCACGGCuuC-CCGUcc -5'
7667 3' -61.8 NC_001973.1 + 132430 0.69 0.500084
Target:  5'- aGCGaGgCGAGCGUGgUGGAGgcgccGGCGGGg -3'
miRNA:   3'- cCGC-CgGCUCGCACgGCUUC-----CCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 134976 0.69 0.509281
Target:  5'- cGGCGaUCGAGUacguccggGCCGucGGGCGGGa -3'
miRNA:   3'- -CCGCcGGCUCGca------CGGCuuCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 152381 0.69 0.518548
Target:  5'- cGGaCGGCCGGcGCGgGCgGGcgcGGGGCGGc -3'
miRNA:   3'- -CC-GCCGGCU-CGCaCGgCU---UCCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 104265 0.69 0.527881
Target:  5'- cGGCGGC--GGCGccGCCGccGGGCuGGu -3'
miRNA:   3'- -CCGCCGgcUCGCa-CGGCuuCCCGuCC- -5'
7667 3' -61.8 NC_001973.1 + 124703 0.69 0.527881
Target:  5'- cGGUGGCCGAGC-UGUac---GGCAGGu -3'
miRNA:   3'- -CCGCCGGCUCGcACGgcuucCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 10712 0.69 0.537276
Target:  5'- gGGCGGCUcgauGAGCGgcaccgucgaguUGUCGAAGcgcaucagcGGCGGGu -3'
miRNA:   3'- -CCGCCGG----CUCGC------------ACGGCUUC---------CCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 123001 0.68 0.546729
Target:  5'- cGCGGCCagcauGAGCGccUCGAAGGGCGc- -3'
miRNA:   3'- cCGCCGG-----CUCGCacGGCUUCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 93849 0.68 0.546729
Target:  5'- cGUGGCCGuGUG-GCUGAAGGuGCGcauGGa -3'
miRNA:   3'- cCGCCGGCuCGCaCGGCUUCC-CGU---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.