miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7669 5' -55.2 NC_001973.1 + 133663 1.15 0.001681
Target:  5'- cGCCGUUGAUGAGCGAGCGCCCGAACCg -3'
miRNA:   3'- -CGGCAACUACUCGCUCGCGGGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 140093 0.78 0.389926
Target:  5'- cGUCGUcaggucGAUGAGCGAGCGCgCG-GCCg -3'
miRNA:   3'- -CGGCAa-----CUACUCGCUCGCGgGCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 42986 0.76 0.487969
Target:  5'- uGCCGUUGcgGAguuugcguGCGAGCG-CCGAcucGCCg -3'
miRNA:   3'- -CGGCAACuaCU--------CGCUCGCgGGCU---UGG- -5'
7669 5' -55.2 NC_001973.1 + 55840 0.75 0.523506
Target:  5'- aCCGgcGA-GGGCGAGCGCgcccgcaacggcggCCGAACCu -3'
miRNA:   3'- cGGCaaCUaCUCGCUCGCG--------------GGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 109564 0.74 0.556008
Target:  5'- cGCCGgcGcgGGGCGGGUuucggGCgCGAGCCg -3'
miRNA:   3'- -CGGCaaCuaCUCGCUCG-----CGgGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 80682 0.74 0.575993
Target:  5'- aGCCGUaGAUGcuguuGGCGAuGCGCuuGAGCg -3'
miRNA:   3'- -CGGCAaCUAC-----UCGCU-CGCGggCUUGg -5'
7669 5' -55.2 NC_001973.1 + 93574 0.72 0.686194
Target:  5'- gGCCGa-GGUGAGCGgucgcguAGUGCCCGcGCUg -3'
miRNA:   3'- -CGGCaaCUACUCGC-------UCGCGGGCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 53319 0.72 0.687197
Target:  5'- gGCCGUcgucUGcaGGGCGucgauGCGCCCGcGCCg -3'
miRNA:   3'- -CGGCA----ACuaCUCGCu----CGCGGGCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 122841 0.72 0.697201
Target:  5'- cGCCGUUGAUGcGCacgcuGUGCCCGc-CCa -3'
miRNA:   3'- -CGGCAACUACuCGcu---CGCGGGCuuGG- -5'
7669 5' -55.2 NC_001973.1 + 3996 0.71 0.733683
Target:  5'- cGCCGgauaggggacgcgcUUGAacgcgcUGAGCGcGCGCUCGAACg -3'
miRNA:   3'- -CGGC--------------AACU------ACUCGCuCGCGGGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 45999 0.71 0.746242
Target:  5'- uGCCGc-GAUGccggcgcGCGAGCGCCUGucugGCCa -3'
miRNA:   3'- -CGGCaaCUACu------CGCUCGCGGGCu---UGG- -5'
7669 5' -55.2 NC_001973.1 + 39750 0.71 0.765233
Target:  5'- uCCGU-----GGCGAG-GCCCGAGCCg -3'
miRNA:   3'- cGGCAacuacUCGCUCgCGGGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 63048 0.7 0.774559
Target:  5'- gGCuCGUUGuuuuUGAGCGccacaaAGUGCUCGAGCa -3'
miRNA:   3'- -CG-GCAACu---ACUCGC------UCGCGGGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 28408 0.7 0.783759
Target:  5'- cGCCGUcaGUGAGCGcgcuuGGCGgCCGcGGCCg -3'
miRNA:   3'- -CGGCAacUACUCGC-----UCGCgGGC-UUGG- -5'
7669 5' -55.2 NC_001973.1 + 89537 0.7 0.792826
Target:  5'- --gGgcGGUGGGCGAggcgguGCGCCCGAuCCu -3'
miRNA:   3'- cggCaaCUACUCGCU------CGCGGGCUuGG- -5'
7669 5' -55.2 NC_001973.1 + 147000 0.7 0.80175
Target:  5'- cCUGUUGAUGucGGaCGAGgGCaCGAACCg -3'
miRNA:   3'- cGGCAACUAC--UC-GCUCgCGgGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 121653 0.7 0.80175
Target:  5'- cGCCGccucGAaGGGCGcgucgcucgcGGCGCCCGGauACCg -3'
miRNA:   3'- -CGGCaa--CUaCUCGC----------UCGCGGGCU--UGG- -5'
7669 5' -55.2 NC_001973.1 + 79980 0.69 0.835856
Target:  5'- cGCCGUUGccGGGCaGAaagucGaCGCCCGGguugGCCa -3'
miRNA:   3'- -CGGCAACuaCUCG-CU-----C-GCGGGCU----UGG- -5'
7669 5' -55.2 NC_001973.1 + 157724 0.69 0.835856
Target:  5'- uGCCGUUGAcgaggugGAGCGcGGUGCgCGcGCUg -3'
miRNA:   3'- -CGGCAACUa------CUCGC-UCGCGgGCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 109308 0.69 0.835856
Target:  5'- cGUCGggGucgagGAGCGcgucGCGCgCGAACCg -3'
miRNA:   3'- -CGGCaaCua---CUCGCu---CGCGgGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.