miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7669 5' -55.2 NC_001973.1 + 3996 0.71 0.733683
Target:  5'- cGCCGgauaggggacgcgcUUGAacgcgcUGAGCGcGCGCUCGAACg -3'
miRNA:   3'- -CGGC--------------AACU------ACUCGCuCGCGGGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 4306 0.69 0.843946
Target:  5'- cGCUGgucGAUGAGCGcgcccagcccGCGCUCGAcgACCu -3'
miRNA:   3'- -CGGCaa-CUACUCGCu---------CGCGGGCU--UGG- -5'
7669 5' -55.2 NC_001973.1 + 6925 0.68 0.867055
Target:  5'- cGCUGUgGAac-GCGcuGCGCCUGGACCg -3'
miRNA:   3'- -CGGCAaCUacuCGCu-CGCGGGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 7831 0.67 0.901356
Target:  5'- uCUGUUGAgaacGGGCGGcgccGCGCCCGucgAGCUg -3'
miRNA:   3'- cGGCAACUa---CUCGCU----CGCGGGC---UUGG- -5'
7669 5' -55.2 NC_001973.1 + 17834 0.67 0.907544
Target:  5'- cGCCGUcGA-GGGUGGcGUGCCCGucgaaaaaguACCa -3'
miRNA:   3'- -CGGCAaCUaCUCGCU-CGCGGGCu---------UGG- -5'
7669 5' -55.2 NC_001973.1 + 21321 0.69 0.859552
Target:  5'- cCCGaUGAUGccgcacGCGAGCcggccGCCCGAguuGCCg -3'
miRNA:   3'- cGGCaACUACu-----CGCUCG-----CGGGCU---UGG- -5'
7669 5' -55.2 NC_001973.1 + 22408 0.68 0.894285
Target:  5'- cGCUGgggGAUGGGgaCGAcgccgccGCGCCCGcGCCc -3'
miRNA:   3'- -CGGCaa-CUACUC--GCU-------CGCGGGCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 28408 0.7 0.783759
Target:  5'- cGCCGUcaGUGAGCGcgcuuGGCGgCCGcGGCCg -3'
miRNA:   3'- -CGGCAacUACUCGC-----UCGCgGGC-UUGG- -5'
7669 5' -55.2 NC_001973.1 + 29972 0.68 0.87435
Target:  5'- cGCCGgcucggUGGUGGGCGcGUauaucugcgaGCCCGAcgacgcGCCc -3'
miRNA:   3'- -CGGCa-----ACUACUCGCuCG----------CGGGCU------UGG- -5'
7669 5' -55.2 NC_001973.1 + 30393 0.67 0.901356
Target:  5'- gGCCGgcGcgGcGGCGgcggcggaGGCGCCgCGAACUg -3'
miRNA:   3'- -CGGCaaCuaC-UCGC--------UCGCGG-GCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 32354 0.66 0.944324
Target:  5'- uCCGUacccGAUGAGCGuGUGCaugcaCGuGCCg -3'
miRNA:   3'- cGGCAa---CUACUCGCuCGCGg----GCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 34623 0.67 0.912916
Target:  5'- uGCgGUUGAUGGGCuGGUaguagaaGCCCGAc-- -3'
miRNA:   3'- -CGgCAACUACUCGcUCG-------CGGGCUugg -5'
7669 5' -55.2 NC_001973.1 + 39750 0.71 0.765233
Target:  5'- uCCGU-----GGCGAG-GCCCGAGCCg -3'
miRNA:   3'- cGGCAacuacUCGCUCgCGGGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 42986 0.76 0.487969
Target:  5'- uGCCGUUGcgGAguuugcguGCGAGCG-CCGAcucGCCg -3'
miRNA:   3'- -CGGCAACuaCU--------CGCUCGCgGGCU---UGG- -5'
7669 5' -55.2 NC_001973.1 + 43986 0.68 0.87435
Target:  5'- uGCCGgcGAUccAGCGcAGCGCCCacucGGCCu -3'
miRNA:   3'- -CGGCaaCUAc-UCGC-UCGCGGGc---UUGG- -5'
7669 5' -55.2 NC_001973.1 + 44428 0.68 0.867055
Target:  5'- cGCuCGggGAUcGAaCGGGCGCUCGGGCg -3'
miRNA:   3'- -CG-GCaaCUA-CUcGCUCGCGGGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 44461 0.68 0.867055
Target:  5'- cGCuCGggGAUcGAaCGGGCGCUCGGGCg -3'
miRNA:   3'- -CG-GCaaCUA-CUcGCUCGCGGGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 44598 0.69 0.843946
Target:  5'- cGgCGgcGgcGAGCGGGCucgGCCCGA-CCg -3'
miRNA:   3'- -CgGCaaCuaCUCGCUCG---CGGGCUuGG- -5'
7669 5' -55.2 NC_001973.1 + 45999 0.71 0.746242
Target:  5'- uGCCGc-GAUGccggcgcGCGAGCGCCUGucugGCCa -3'
miRNA:   3'- -CGGCaaCUACu------CGCUCGCGGGCu---UGG- -5'
7669 5' -55.2 NC_001973.1 + 53319 0.72 0.687197
Target:  5'- gGCCGUcgucUGcaGGGCGucgauGCGCCCGcGCCg -3'
miRNA:   3'- -CGGCA----ACuaCUCGCu----CGCGGGCuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.