Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7670 | 3' | -54 | NC_001973.1 | + | 132949 | 1.08 | 0.005011 |
Target: 5'- uGAUCACGAUGAGCACGAUGCCCACCAc -3' miRNA: 3'- -CUAGUGCUACUCGUGCUACGGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 74647 | 0.79 | 0.354948 |
Target: 5'- --gCGCGGUGAGCGgGuaguUGCCCACCGg -3' miRNA: 3'- cuaGUGCUACUCGUgCu---ACGGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 21478 | 0.77 | 0.450328 |
Target: 5'- -cUCAccuCGGUGAGCGCGucgcgGCCCGCCGa -3' miRNA: 3'- cuAGU---GCUACUCGUGCua---CGGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 573 | 0.76 | 0.4787 |
Target: 5'- ---aGCGAcGGGCACGA-GCCCGCCAc -3' miRNA: 3'- cuagUGCUaCUCGUGCUaCGGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 128174 | 0.75 | 0.527818 |
Target: 5'- uGAUCACauccuGCGCGAUGUCCGCCAu -3' miRNA: 3'- -CUAGUGcuacuCGUGCUACGGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 45203 | 0.73 | 0.672073 |
Target: 5'- cGAUCugGccGGGCGCGAUGCggGCCGc -3' miRNA: 3'- -CUAGugCuaCUCGUGCUACGggUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 31592 | 0.72 | 0.692676 |
Target: 5'- --cCACGuUGGGCGCcugGCCCACCAc -3' miRNA: 3'- cuaGUGCuACUCGUGcuaCGGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 101958 | 0.71 | 0.743105 |
Target: 5'- cGAUCGUGGUGgcGGCgACGAUGCgCGCCAg -3' miRNA: 3'- -CUAGUGCUAC--UCG-UGCUACGgGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 24136 | 0.7 | 0.791027 |
Target: 5'- -cUCGCgGGUGcGCGCGccGCCCGCCu -3' miRNA: 3'- cuAGUG-CUACuCGUGCuaCGGGUGGu -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 53931 | 0.7 | 0.809225 |
Target: 5'- --cCACGGUGAGCuCGuccacGUGCCCGCg- -3' miRNA: 3'- cuaGUGCUACUCGuGC-----UACGGGUGgu -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 40603 | 0.68 | 0.881983 |
Target: 5'- --aUugGcgGAGCGCGccGCCgACCAg -3' miRNA: 3'- cuaGugCuaCUCGUGCuaCGGgUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 19834 | 0.68 | 0.888309 |
Target: 5'- gGcgCugGGUGAGCgaGCGGUcuauggcGUCCACCAg -3' miRNA: 3'- -CuaGugCUACUCG--UGCUA-------CGGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 10098 | 0.68 | 0.889 |
Target: 5'- gGAUCGauc-GAGCACGG-GUCCACCAc -3' miRNA: 3'- -CUAGUgcuaCUCGUGCUaCGGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 126590 | 0.68 | 0.895784 |
Target: 5'- cGAUCACGuccuGgGCGAUGUCgGCCAu -3' miRNA: 3'- -CUAGUGCuacuCgUGCUACGGgUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 70760 | 0.68 | 0.908635 |
Target: 5'- aGUCAUGGcacuugUGAGCGgGGcgcUGUCCACCAa -3' miRNA: 3'- cUAGUGCU------ACUCGUgCU---ACGGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 31416 | 0.67 | 0.914697 |
Target: 5'- cGUCGUGGUGGGCACGA---CCACCGg -3' miRNA: 3'- cUAGUGCUACUCGUGCUacgGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 7703 | 0.67 | 0.914697 |
Target: 5'- aGAUU-CGAaacGAGCGCGccGCCCGCCc -3' miRNA: 3'- -CUAGuGCUa--CUCGUGCuaCGGGUGGu -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 17064 | 0.67 | 0.914697 |
Target: 5'- ---gGCGGUGAGCAUGcUGUUgGCCAu -3' miRNA: 3'- cuagUGCUACUCGUGCuACGGgUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 136884 | 0.67 | 0.920513 |
Target: 5'- -cUCgACGGUGGGCAC---GUCCACCAc -3' miRNA: 3'- cuAG-UGCUACUCGUGcuaCGGGUGGU- -5' |
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7670 | 3' | -54 | NC_001973.1 | + | 78180 | 0.67 | 0.920513 |
Target: 5'- cAUCAUGcUGGGCACGGgcaUGCgCAUCAa -3' miRNA: 3'- cUAGUGCuACUCGUGCU---ACGgGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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