miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7670 3' -54 NC_001973.1 + 573 0.76 0.4787
Target:  5'- ---aGCGAcGGGCACGA-GCCCGCCAc -3'
miRNA:   3'- cuagUGCUaCUCGUGCUaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 4312 0.66 0.954342
Target:  5'- ----uCGAUGAGCGCGcccaGCCCGCg- -3'
miRNA:   3'- cuaguGCUACUCGUGCua--CGGGUGgu -5'
7670 3' -54 NC_001973.1 + 6214 0.67 0.94131
Target:  5'- --gCGCGGUGccGGCGCGgcGCCCugUc -3'
miRNA:   3'- cuaGUGCUAC--UCGUGCuaCGGGugGu -5'
7670 3' -54 NC_001973.1 + 7296 0.66 0.947661
Target:  5'- gGGUCAagcacaccgcgcuguCGGUGAacGUGCGcgGCCCGCCc -3'
miRNA:   3'- -CUAGU---------------GCUACU--CGUGCuaCGGGUGGu -5'
7670 3' -54 NC_001973.1 + 7703 0.67 0.914697
Target:  5'- aGAUU-CGAaacGAGCGCGccGCCCGCCc -3'
miRNA:   3'- -CUAGuGCUa--CUCGUGCuaCGGGUGGu -5'
7670 3' -54 NC_001973.1 + 7916 0.66 0.945895
Target:  5'- uGUUGCGAggcgGAGCGCGuGUGCgCgGCCGg -3'
miRNA:   3'- cUAGUGCUa---CUCGUGC-UACG-GgUGGU- -5'
7670 3' -54 NC_001973.1 + 10098 0.68 0.889
Target:  5'- gGAUCGauc-GAGCACGG-GUCCACCAc -3'
miRNA:   3'- -CUAGUgcuaCUCGUGCUaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 10341 0.67 0.94131
Target:  5'- aGGUCgGCGAUGcggccguucGGCugGcaGCCCACCGc -3'
miRNA:   3'- -CUAG-UGCUAC---------UCGugCuaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 12976 0.66 0.954342
Target:  5'- --gCACGGgcaAGUACGAU-CCCGCCAu -3'
miRNA:   3'- cuaGUGCUac-UCGUGCUAcGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 17064 0.67 0.914697
Target:  5'- ---gGCGGUGAGCAUGcUGUUgGCCAu -3'
miRNA:   3'- cuagUGCUACUCGUGCuACGGgUGGU- -5'
7670 3' -54 NC_001973.1 + 19834 0.68 0.888309
Target:  5'- gGcgCugGGUGAGCgaGCGGUcuauggcGUCCACCAg -3'
miRNA:   3'- -CuaGugCUACUCG--UGCUA-------CGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 21478 0.77 0.450328
Target:  5'- -cUCAccuCGGUGAGCGCGucgcgGCCCGCCGa -3'
miRNA:   3'- cuAGU---GCUACUCGUGCua---CGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 24136 0.7 0.791027
Target:  5'- -cUCGCgGGUGcGCGCGccGCCCGCCu -3'
miRNA:   3'- cuAGUG-CUACuCGUGCuaCGGGUGGu -5'
7670 3' -54 NC_001973.1 + 28708 0.66 0.947661
Target:  5'- aGGUCgGCGAUGAGcCGCGAcagcuucucgucgaGCCCGCuCAg -3'
miRNA:   3'- -CUAG-UGCUACUC-GUGCUa-------------CGGGUG-GU- -5'
7670 3' -54 NC_001973.1 + 31416 0.67 0.914697
Target:  5'- cGUCGUGGUGGGCACGA---CCACCGg -3'
miRNA:   3'- cUAGUGCUACUCGUGCUacgGGUGGU- -5'
7670 3' -54 NC_001973.1 + 31592 0.72 0.692676
Target:  5'- --cCACGuUGGGCGCcugGCCCACCAc -3'
miRNA:   3'- cuaGUGCuACUCGUGcuaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 31742 0.66 0.954342
Target:  5'- --gCGCcgGGUGGGCcgugccgcgcGCGcUGCCCACCAa -3'
miRNA:   3'- cuaGUG--CUACUCG----------UGCuACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 33334 0.66 0.958212
Target:  5'- gGGUCACGuUGcGGCcgcggAUGAUGCCCguGCCGg -3'
miRNA:   3'- -CUAGUGCuAC-UCG-----UGCUACGGG--UGGU- -5'
7670 3' -54 NC_001973.1 + 37343 0.66 0.950238
Target:  5'- cGUCACGAgcccgGAG-ACGA-GCCuCGCCAc -3'
miRNA:   3'- cUAGUGCUa----CUCgUGCUaCGG-GUGGU- -5'
7670 3' -54 NC_001973.1 + 39434 0.66 0.96185
Target:  5'- cGUCGCGuccaGGGCGacgcCGAUGCCCAgCu -3'
miRNA:   3'- cUAGUGCua--CUCGU----GCUACGGGUgGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.