miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7676 3' -51.5 NC_001973.1 + 96575 0.66 0.991741
Target:  5'- --cGAUC-UGCGCGguggCGGCGGcgcUGGCg -3'
miRNA:   3'- aucCUAGaAUGCGCa---GCCGCCu--AUUG- -5'
7676 3' -51.5 NC_001973.1 + 111254 0.66 0.991035
Target:  5'- gGGGGUCgacgcggACGCGcugcccgugggcaacUCGGUGGugGUGGCg -3'
miRNA:   3'- aUCCUAGaa-----UGCGC---------------AGCCGCC--UAUUG- -5'
7676 3' -51.5 NC_001973.1 + 12505 0.67 0.982335
Target:  5'- -cGGAggUUUACGCGUCGGCcGGcucaaauugAACg -3'
miRNA:   3'- auCCUa-GAAUGCGCAGCCG-CCua-------UUG- -5'
7676 3' -51.5 NC_001973.1 + 123730 0.67 0.975338
Target:  5'- -uGGGUUUgGCGCG-CGGCGaGAUcGCa -3'
miRNA:   3'- auCCUAGAaUGCGCaGCCGC-CUAuUG- -5'
7676 3' -51.5 NC_001973.1 + 63510 0.67 0.972608
Target:  5'- gAGGAUCUggAC---UCGGCGGAUAGu -3'
miRNA:   3'- aUCCUAGAa-UGcgcAGCCGCCUAUUg -5'
7676 3' -51.5 NC_001973.1 + 109311 0.68 0.966506
Target:  5'- cGGGGUCgaggaGCGCGUCGcGCGcGAaccggAACa -3'
miRNA:   3'- aUCCUAGaa---UGCGCAGC-CGC-CUa----UUG- -5'
7676 3' -51.5 NC_001973.1 + 135551 0.68 0.96312
Target:  5'- aAGGAUaaaAUGCGUCGGCuGAaGGCg -3'
miRNA:   3'- aUCCUAgaaUGCGCAGCCGcCUaUUG- -5'
7676 3' -51.5 NC_001973.1 + 130635 0.7 0.921717
Target:  5'- gUAGGAUUUUACGUGcCGGCaaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 12285 0.7 0.921717
Target:  5'- gUAGGAUUUUACGUGcCGGCcaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 12207 0.7 0.921717
Target:  5'- gUAGGAUUUUACGUGcCGGCcaGGGUc-- -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 16536 0.7 0.909736
Target:  5'- --aGAUUUUACGCGUCGGCuaGGGUc-- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 81171 0.7 0.909736
Target:  5'- -cGGAUCggGCGUcggGUCGGCGGcggcGACg -3'
miRNA:   3'- auCCUAGaaUGCG---CAGCCGCCua--UUG- -5'
7676 3' -51.5 NC_001973.1 + 160562 0.7 0.909736
Target:  5'- --aGAUUUUACGCGUCGGCuaGGGUc-- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCG--CCUAuug -5'
7676 3' -51.5 NC_001973.1 + 105366 0.7 0.903366
Target:  5'- -cGGcgCggAgGCGUCGGCGGcuUGACg -3'
miRNA:   3'- auCCuaGaaUgCGCAGCCGCCu-AUUG- -5'
7676 3' -51.5 NC_001973.1 + 160481 0.7 0.903366
Target:  5'- gUAGGAUUUUACGUGcCGGCcaGGGUcGAUg -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUA-UUG- -5'
7676 3' -51.5 NC_001973.1 + 127529 0.7 0.903366
Target:  5'- gUAGGAUUUUACGUGcCGGCaaGGGUcGAUg -3'
miRNA:   3'- -AUCCUAGAAUGCGCaGCCG--CCUA-UUG- -5'
7676 3' -51.5 NC_001973.1 + 2703 0.71 0.882772
Target:  5'- ---aAUCUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- auccUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 160406 0.71 0.875426
Target:  5'- --aGAUUUUACGCGUCGGCcGGUGu- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCGcCUAUug -5'
7676 3' -51.5 NC_001973.1 + 130560 0.72 0.852018
Target:  5'- --aGAUUUUACGCGUCGGcCGGGg--- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCC-GCCUauug -5'
7676 3' -51.5 NC_001973.1 + 72046 0.72 0.852018
Target:  5'- --aGAUUUUACGCGUCGGCGaGGg--- -3'
miRNA:   3'- aucCUAGAAUGCGCAGCCGC-CUauug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.