miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7676 5' -55.7 NC_001973.1 + 34081 0.66 0.927588
Target:  5'- -cGCCau-CUUGGCGGugGCGUAgccgcAGAg -3'
miRNA:   3'- uuUGGcucGAGCCGCCugCGCAU-----UCU- -5'
7676 5' -55.7 NC_001973.1 + 121545 0.66 0.927588
Target:  5'- -cACCGAGC--GGCGucGGCGCGUGugguGGAa -3'
miRNA:   3'- uuUGGCUCGagCCGC--CUGCGCAU----UCU- -5'
7676 5' -55.7 NC_001973.1 + 7266 0.66 0.927588
Target:  5'- ---gCGGGCUCGGCGcgcGGCGCGc---- -3'
miRNA:   3'- uuugGCUCGAGCCGC---CUGCGCauucu -5'
7676 5' -55.7 NC_001973.1 + 30391 0.66 0.922167
Target:  5'- cGGGCCG-GCgCGGCGG-CGgCGgcGGAg -3'
miRNA:   3'- -UUUGGCuCGaGCCGCCuGC-GCauUCU- -5'
7676 5' -55.7 NC_001973.1 + 47798 0.66 0.922167
Target:  5'- cGGCCGcGC-CGGCcGACGCGUGc-- -3'
miRNA:   3'- uUUGGCuCGaGCCGcCUGCGCAUucu -5'
7676 5' -55.7 NC_001973.1 + 48052 0.66 0.922167
Target:  5'- aAAAUCGGGCaguucagauUCGGCgaGGACGCGUu--- -3'
miRNA:   3'- -UUUGGCUCG---------AGCCG--CCUGCGCAuucu -5'
7676 5' -55.7 NC_001973.1 + 4842 0.66 0.910608
Target:  5'- cGACCGcuuaaAG-UCGGCGGGCGCGa---- -3'
miRNA:   3'- uUUGGC-----UCgAGCCGCCUGCGCauucu -5'
7676 5' -55.7 NC_001973.1 + 56513 0.66 0.904471
Target:  5'- cGGGgCGGGCUCGGCgccaagcucGGGCGgGgcGGGc -3'
miRNA:   3'- -UUUgGCUCGAGCCG---------CCUGCgCauUCU- -5'
7676 5' -55.7 NC_001973.1 + 56459 0.66 0.904471
Target:  5'- cGGGgCGGGCUCGGCgccaagcucGGGCGgGgcGGGc -3'
miRNA:   3'- -UUUgGCUCGAGCCG---------CCUGCgCauUCU- -5'
7676 5' -55.7 NC_001973.1 + 36763 0.66 0.904471
Target:  5'- aAGACCGAGCgagaGGCGcgcGACGCGc---- -3'
miRNA:   3'- -UUUGGCUCGag--CCGC---CUGCGCauucu -5'
7676 5' -55.7 NC_001973.1 + 19683 0.66 0.898099
Target:  5'- gAAAUCGcGcCUCGGCcGGCGCGUAAa- -3'
miRNA:   3'- -UUUGGCuC-GAGCCGcCUGCGCAUUcu -5'
7676 5' -55.7 NC_001973.1 + 106961 0.66 0.898099
Target:  5'- -cGCCGGgcgcGCUCGGCGuGCGCGcgcugcagAGGAa -3'
miRNA:   3'- uuUGGCU----CGAGCCGCcUGCGCa-------UUCU- -5'
7676 5' -55.7 NC_001973.1 + 139273 0.67 0.884662
Target:  5'- uGAAUCG-GCgCGaGCGGACGUGUuugGAGAu -3'
miRNA:   3'- -UUUGGCuCGaGC-CGCCUGCGCA---UUCU- -5'
7676 5' -55.7 NC_001973.1 + 98337 0.67 0.884662
Target:  5'- -cGCUGcAGCggCGGCGGcGCGCGUucGGc -3'
miRNA:   3'- uuUGGC-UCGa-GCCGCC-UGCGCAuuCU- -5'
7676 5' -55.7 NC_001973.1 + 74211 0.67 0.884662
Target:  5'- ---aCGAGCUCGGCgucGGAgGCGUu--- -3'
miRNA:   3'- uuugGCUCGAGCCG---CCUgCGCAuucu -5'
7676 5' -55.7 NC_001973.1 + 83947 0.67 0.862837
Target:  5'- -cGCCGcuCggaGGCGGGCGCGUcGAGGc -3'
miRNA:   3'- uuUGGCucGag-CCGCCUGCGCA-UUCU- -5'
7676 5' -55.7 NC_001973.1 + 55665 0.67 0.862837
Target:  5'- gGAGCCGAgGC-CGGCGGugaauCGCGUc--- -3'
miRNA:   3'- -UUUGGCU-CGaGCCGCCu----GCGCAuucu -5'
7676 5' -55.7 NC_001973.1 + 114690 0.67 0.862837
Target:  5'- -cGCCGAGCUCGaGUuuGGGCGUGa---- -3'
miRNA:   3'- uuUGGCUCGAGC-CG--CCUGCGCauucu -5'
7676 5' -55.7 NC_001973.1 + 121221 0.67 0.862837
Target:  5'- cAGAgCGAGCgccacgcggCGGCGcGGCGCGUcgcAGAa -3'
miRNA:   3'- -UUUgGCUCGa--------GCCGC-CUGCGCAu--UCU- -5'
7676 5' -55.7 NC_001973.1 + 125464 0.68 0.855136
Target:  5'- cGAUCGAGCUgGaGaUGGAgUGCGUGAGAa -3'
miRNA:   3'- uUUGGCUCGAgC-C-GCCU-GCGCAUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.