Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7678 | 3' | -53.4 | NC_001973.1 | + | 16470 | 0.77 | 0.496071 |
Target: 5'- -cCGGCcGGGGUCaAUCGaGUUCAAGCc -3' miRNA: 3'- caGCCGuUCCCAG-UAGCcCAAGUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 127544 | 0.77 | 0.496071 |
Target: 5'- -cCGGCAAGGGUCGaUGGaGgUCAAGCc -3' miRNA: 3'- caGCCGUUCCCAGUaGCC-CaAGUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 72240 | 0.77 | 0.496071 |
Target: 5'- -cCGGCcGGGGUCaAUCGaGUUCAAGCc -3' miRNA: 3'- caGCCGuUCCCAG-UAGCcCAAGUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 151381 | 0.75 | 0.607257 |
Target: 5'- cGUCGGCcGGGGUCGUCuGaGGUUagaauaacgCGGGCg -3' miRNA: 3'- -CAGCCGuUCCCAGUAG-C-CCAA---------GUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 127466 | 0.74 | 0.627989 |
Target: 5'- -cCGGCAAGGGUCaAUCGaGUUCAAa- -3' miRNA: 3'- caGCCGUUCCCAG-UAGCcCAAGUUcg -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 151037 | 0.74 | 0.638364 |
Target: 5'- cUCGGCcgAAGGGUCAUUGcaGGUcagacUCGAGCu -3' miRNA: 3'- cAGCCG--UUCCCAGUAGC--CCA-----AGUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 130982 | 0.74 | 0.648734 |
Target: 5'- cGUCGGCGAGGGUCgAUUGGaGgUCAAc- -3' miRNA: 3'- -CAGCCGUUCCCAG-UAGCC-CaAGUUcg -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 129335 | 0.73 | 0.68999 |
Target: 5'- -cCGGCAAGGGUCGauaGaGG-UCAAGCc -3' miRNA: 3'- caGCCGUUCCCAGUag-C-CCaAGUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 130570 | 0.73 | 0.68999 |
Target: 5'- cGUCGGCcGGGGUCgAUCGaGUUCAAa- -3' miRNA: 3'- -CAGCCGuUCCCAG-UAGCcCAAGUUcg -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 12142 | 0.72 | 0.750198 |
Target: 5'- cGUCuGCcGGGGUCaAUCGaGUUCGAGCc -3' miRNA: 3'- -CAGcCGuUCCCAG-UAGCcCAAGUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 134973 | 0.7 | 0.849174 |
Target: 5'- gGUCGGCGAucgaguacguccGGGcCGUCGGGcgggagcCGGGCa -3' miRNA: 3'- -CAGCCGUU------------CCCaGUAGCCCaa-----GUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 81850 | 0.69 | 0.90019 |
Target: 5'- gGUCGaC-GGGGUCGUCGGG--CGAGUa -3' miRNA: 3'- -CAGCcGuUCCCAGUAGCCCaaGUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 130727 | 0.69 | 0.90019 |
Target: 5'- cGUCGGCcGGGGcaAUCGaGUUCAAGa -3' miRNA: 3'- -CAGCCGuUCCCagUAGCcCAAGUUCg -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 72151 | 0.69 | 0.90019 |
Target: 5'- cGUCGGCAAaGGUCgAUCGaGUUCAAa- -3' miRNA: 3'- -CAGCCGUUcCCAG-UAGCcCAAGUUcg -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 160496 | 0.69 | 0.906557 |
Target: 5'- -cCGGCcAGGGUCGaUGGaGgUCGAGCc -3' miRNA: 3'- caGCCGuUCCCAGUaGCC-CaAGUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 109566 | 0.68 | 0.918565 |
Target: 5'- -cCGGCGcGGGg---CGGGuUUCGGGCg -3' miRNA: 3'- caGCCGUuCCCaguaGCCC-AAGUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 119118 | 0.68 | 0.924203 |
Target: 5'- cGUCGGCcgcgcuGGUCAUCGGGcugUUCGAc- -3' miRNA: 3'- -CAGCCGuuc---CCAGUAGCCC---AAGUUcg -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 127388 | 0.68 | 0.929594 |
Target: 5'- -cCGGCAAGGGgcaAUCGaGUUCAAa- -3' miRNA: 3'- caGCCGUUCCCag-UAGCcCAAGUUcg -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 150929 | 0.68 | 0.93474 |
Target: 5'- cGUCcGCcGGGGUCGUUGGaGgucagacUCGAGCu -3' miRNA: 3'- -CAGcCGuUCCCAGUAGCC-Ca------AGUUCG- -5' |
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7678 | 3' | -53.4 | NC_001973.1 | + | 55894 | 0.68 | 0.93474 |
Target: 5'- -gCGGCAGgcucGGGcUCGggcUCGGGcUCGGGCu -3' miRNA: 3'- caGCCGUU----CCC-AGU---AGCCCaAGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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