miRNA display CGI


Results 21 - 40 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7678 5' -57.5 NC_001973.1 + 21050 1.04 0.004408
Target:  5'- cAUGCCCGAGCUCGAGCUCGGCGGGCGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 21149 0.86 0.074886
Target:  5'- cAUGCUUc-GCUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGuuUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 21261 0.66 0.827584
Target:  5'- cAUGUCCAAA-UCGAGCcgCGGCGucCGc -3'
miRNA:   3'- -UACGGGUUUgAGCUCGa-GCCGCcuGC- -5'
7678 5' -57.5 NC_001973.1 + 23848 0.66 0.842343
Target:  5'- -aGCCCGAGCUgugCGAGCUgcugucccgcaaGGCGGuCa -3'
miRNA:   3'- uaCGGGUUUGA---GCUCGAg-----------CCGCCuGc -5'
7678 5' -57.5 NC_001973.1 + 26848 0.67 0.819137
Target:  5'- cAUGUCCAAACgccagUCGAuCUCGaccGCGGGCGc -3'
miRNA:   3'- -UACGGGUUUG-----AGCUcGAGC---CGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 29951 0.69 0.687197
Target:  5'- -cGCCuCGAGCcCGuacagagacgccGGCUCGGUGGugGg -3'
miRNA:   3'- uaCGG-GUUUGaGC------------UCGAGCCGCCugC- -5'
7678 5' -57.5 NC_001973.1 + 31028 0.7 0.612324
Target:  5'- -cGCUCAugaucuGCUCGAGCgucugaacgccgaCGGCGGGCa -3'
miRNA:   3'- uaCGGGUu-----UGAGCUCGa------------GCCGCCUGc -5'
7678 5' -57.5 NC_001973.1 + 32533 0.68 0.765233
Target:  5'- -aGUCCAAGuucgCGAGCUCGGCGaucgccgccgccGACGc -3'
miRNA:   3'- uaCGGGUUUga--GCUCGAGCCGC------------CUGC- -5'
7678 5' -57.5 NC_001973.1 + 37242 0.66 0.835856
Target:  5'- -aGCCCGGAgaCGAGCcCGGa-GACGa -3'
miRNA:   3'- uaCGGGUUUgaGCUCGaGCCgcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 37290 0.66 0.835856
Target:  5'- -aGCCCGGAgaCGAGCcCGGa-GACGa -3'
miRNA:   3'- uaCGGGUUUgaGCUCGaGCCgcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 37314 0.66 0.835856
Target:  5'- -aGCCCGGAgaCGAGCcCGGa-GACGa -3'
miRNA:   3'- uaCGGGUUUgaGCUCGaGCCgcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 39455 0.66 0.843946
Target:  5'- gAUGCCC-AGCUCGAcGUaUCGGUGcGCGu -3'
miRNA:   3'- -UACGGGuUUGAGCU-CG-AGCCGCcUGC- -5'
7678 5' -57.5 NC_001973.1 + 41110 0.69 0.701189
Target:  5'- -cG-CCGAGCUCGAGUuuggucauuuaguugUCGGCGGcgGCGg -3'
miRNA:   3'- uaCgGGUUUGAGCUCG---------------AGCCGCC--UGC- -5'
7678 5' -57.5 NC_001973.1 + 43624 0.66 0.851847
Target:  5'- -cGCCgAccAGCUCGAGCagcagccugUCGGC-GACGa -3'
miRNA:   3'- uaCGGgU--UUGAGCUCG---------AGCCGcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 44480 0.71 0.596134
Target:  5'- -cGCUCGGGCgCGGGCaUCGGCgcGGGCGg -3'
miRNA:   3'- uaCGGGUUUGaGCUCG-AGCCG--CCUGC- -5'
7678 5' -57.5 NC_001973.1 + 46712 0.69 0.717041
Target:  5'- cAUGUCCAAAUgguaCGAGCgCaGCGGAUGg -3'
miRNA:   3'- -UACGGGUUUGa---GCUCGaGcCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 48861 0.73 0.469237
Target:  5'- -cGCUCAGAUaCGuGCUCGGCGG-CGa -3'
miRNA:   3'- uaCGGGUUUGaGCuCGAGCCGCCuGC- -5'
7678 5' -57.5 NC_001973.1 + 51460 0.72 0.54609
Target:  5'- -aGCCCGGg--CGAGCUCGaGCGGcCGg -3'
miRNA:   3'- uaCGGGUUugaGCUCGAGC-CGCCuGC- -5'
7678 5' -57.5 NC_001973.1 + 52143 0.72 0.497466
Target:  5'- -cGCCgCAgaAACUCGGGCagcCGGUGGGCGc -3'
miRNA:   3'- uaCGG-GU--UUGAGCUCGa--GCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 52721 0.69 0.707152
Target:  5'- -cGCCgcAGCUCGAGCgccaGGCGGcGCGu -3'
miRNA:   3'- uaCGGguUUGAGCUCGag--CCGCC-UGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.