miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7678 5' -57.5 NC_001973.1 + 944 0.72 0.54609
Target:  5'- gAUGCUCAGACU-GAGCUucCGGCgcGGACGc -3'
miRNA:   3'- -UACGGGUUUGAgCUCGA--GCCG--CCUGC- -5'
7678 5' -57.5 NC_001973.1 + 2673 0.92 0.030836
Target:  5'- -cGCCCGAGCUCGAGCUCGGCcGACGc -3'
miRNA:   3'- uaCGGGUUUGAGCUCGAGCCGcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 2792 0.84 0.105432
Target:  5'- -cGCCUAAAUU-GAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUUUGAgCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 2855 0.73 0.469237
Target:  5'- -aGCCCGAugagaucauGCuUUGAucacGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUU---------UG-AGCU----CGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 4327 0.71 0.556008
Target:  5'- -aGCCCGcGCUCGAcgaccuCUCGGCGGcCGu -3'
miRNA:   3'- uaCGGGUuUGAGCUc-----GAGCCGCCuGC- -5'
7678 5' -57.5 NC_001973.1 + 7258 0.67 0.810523
Target:  5'- gAUGCgCAg---CGGGCUCGGCGcGCGg -3'
miRNA:   3'- -UACGgGUuugaGCUCGAGCCGCcUGC- -5'
7678 5' -57.5 NC_001973.1 + 7431 0.7 0.646815
Target:  5'- -aGUUCAagGACUCgcacguGAGCUCGGCGGuGCGg -3'
miRNA:   3'- uaCGGGU--UUGAG------CUCGAGCCGCC-UGC- -5'
7678 5' -57.5 NC_001973.1 + 7726 0.66 0.867055
Target:  5'- -cGCCCGAcugacGCUgGAGCacCGGUGcGGCGc -3'
miRNA:   3'- uaCGGGUU-----UGAgCUCGa-GCCGC-CUGC- -5'
7678 5' -57.5 NC_001973.1 + 10480 0.67 0.819137
Target:  5'- -cGCCCGuGCUgGGGUUgcaCGaGCGGGCGc -3'
miRNA:   3'- uaCGGGUuUGAgCUCGA---GC-CGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 10689 0.71 0.565978
Target:  5'- uUGCCCucGAUcaCGAuCUCGGCGGGCGg -3'
miRNA:   3'- uACGGGu-UUGa-GCUcGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 12101 1.06 0.003441
Target:  5'- cAUGCCCAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 12180 0.9 0.038303
Target:  5'- cAUGCCUAAACU-GAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAgCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 12258 0.83 0.123193
Target:  5'- cAUGCCUAAAC-CcAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGaGcUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 12336 1.06 0.003441
Target:  5'- cAUGCCCAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 12417 0.81 0.159057
Target:  5'- --uCCCAAACUUGAGCUCGGCuGACGc -3'
miRNA:   3'- uacGGGUUUGAGCUCGAGCCGcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 16351 0.99 0.009784
Target:  5'- -cGCCUAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 16415 0.92 0.028968
Target:  5'- -aGCCCGAugacaucaugcuucGCUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUU--------------UGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 16493 0.92 0.028968
Target:  5'- -aGCCCGAugacaucaugcuucGCUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUU--------------UGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 17243 0.66 0.859552
Target:  5'- -aGCCCAuauaaauguACUCG-GCcgCGGCGGcCGc -3'
miRNA:   3'- uaCGGGUu--------UGAGCuCGa-GCCGCCuGC- -5'
7678 5' -57.5 NC_001973.1 + 20947 0.76 0.319187
Target:  5'- -aGCCggcgcggUAAACU-GAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGG-------GUUUGAgCUCGAGCCGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.