miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7678 5' -57.5 NC_001973.1 + 160610 1.06 0.003441
Target:  5'- cAUGCCCAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 130941 1.06 0.003441
Target:  5'- cAUGCCCAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 129292 1.06 0.003441
Target:  5'- cAUGCCCAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 129215 1.06 0.003441
Target:  5'- cAUGCCCAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 12101 1.06 0.003441
Target:  5'- cAUGCCCAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 12336 1.06 0.003441
Target:  5'- cAUGCCCAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 130764 1.05 0.004059
Target:  5'- cAUGCCCAAACUCGAGCUCGGCGGGCGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 21050 1.04 0.004408
Target:  5'- cAUGCCCGAGCUCGAGCUCGGCGGGCGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 160377 1.03 0.0052
Target:  5'- -cGCCCAAGCUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 160789 1.02 0.006133
Target:  5'- -cGCCCAAGCUCGAGCUCGGCGGGCGc -3'
miRNA:   3'- uaCGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 127423 1.02 0.00648
Target:  5'- cAUGCCUAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 130862 1.02 0.00648
Target:  5'- cAUGCCUAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 130686 1.02 0.00648
Target:  5'- cAUGCCUAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 16351 0.99 0.009784
Target:  5'- -cGCCUAAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 127581 0.96 0.016927
Target:  5'- -cGCCCAAGCUCGAGCUCGGCGGuCGc -3'
miRNA:   3'- uaCGGGUUUGAGCUCGAGCCGCCuGC- -5'
7678 5' -57.5 NC_001973.1 + 160688 0.96 0.017396
Target:  5'- cAUGCCUuAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGuUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 130530 0.94 0.02349
Target:  5'- cGUGCCUAAAC-CGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGaGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 130608 0.93 0.025491
Target:  5'- cAUGCCUAAAC-CGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGaGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 16493 0.92 0.028968
Target:  5'- -aGCCCGAugacaucaugcuucGCUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUU--------------UGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 16415 0.92 0.028968
Target:  5'- -aGCCCGAugacaucaugcuucGCUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUU--------------UGAGCUCGAGCCGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.