miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7679 3' -53.8 NC_001973.1 + 128972 1.1 0.004145
Target:  5'- uGCUCAAACUCGAGCUCGGCCAACGCGu -3'
miRNA:   3'- -CGAGUUUGAGCUCGAGCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 2673 1.01 0.017676
Target:  5'- cGCcCGAGCUCGAGCUCGGCCGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 150948 0.95 0.040494
Target:  5'- aGgUCAGACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CgAGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 151057 0.95 0.040494
Target:  5'- aGgUCAGACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CgAGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 160377 0.94 0.045187
Target:  5'- cGCcCAAGCUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 12338 0.94 0.049051
Target:  5'- uGCcCAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 129217 0.94 0.049051
Target:  5'- uGCcCAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 129294 0.94 0.049051
Target:  5'- uGCcCAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 12103 0.94 0.049051
Target:  5'- uGCcCAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 130943 0.94 0.049051
Target:  5'- uGCcCAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 160612 0.94 0.049051
Target:  5'- uGCcCAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 160789 0.94 0.051803
Target:  5'- cGCcCAAGCUCGAGCUCGGCgGGCGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 130766 0.93 0.056216
Target:  5'- uGCcCAAACUCGAGCUCGGCgGGCGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 72352 0.93 0.059359
Target:  5'- -aUCAucccuAACUCGAGCUCGGCCGACGCGu -3'
miRNA:   3'- cgAGU-----UUGAGCUCGAGCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 21052 0.92 0.060993
Target:  5'- uGCcCGAGCUCGAGCUCGGCgGGCGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 16351 0.91 0.073712
Target:  5'- cGCcUAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 151342 0.91 0.075726
Target:  5'- aGgUCAGAUUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CgAGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 127425 0.91 0.079911
Target:  5'- uGCcUAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 130688 0.91 0.079911
Target:  5'- uGCcUAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 130864 0.91 0.079911
Target:  5'- uGCcUAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.