miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7679 3' -53.8 NC_001973.1 + 367 0.66 0.958462
Target:  5'- cGCUCAcguaccgcAGCUCGAccgcgucgauguGCUUGGUCAAgaaaaacuCGCGa -3'
miRNA:   3'- -CGAGU--------UUGAGCU------------CGAGCCGGUU--------GCGC- -5'
7679 3' -53.8 NC_001973.1 + 946 0.74 0.624897
Target:  5'- uGCUCAGACU-GAGCUU--CCGGCGCGg -3'
miRNA:   3'- -CGAGUUUGAgCUCGAGccGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 2534 0.68 0.921316
Target:  5'- uGCgCGAACUCGAcCUCGGCCAu---- -3'
miRNA:   3'- -CGaGUUUGAGCUcGAGCCGGUugcgc -5'
7679 3' -53.8 NC_001973.1 + 2673 1.01 0.017676
Target:  5'- cGCcCGAGCUCGAGCUCGGCCGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 2792 0.75 0.594038
Target:  5'- cGCcUAAAUU-GAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAgCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 2866 0.67 0.946317
Target:  5'- -aUCAuGCuUUGAucacGCUCGGCgGACGCGc -3'
miRNA:   3'- cgAGUuUG-AGCU----CGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 3191 0.67 0.954646
Target:  5'- cGCUCcgcGCUCGccAGCUCGGgCUGAuCGCu -3'
miRNA:   3'- -CGAGuu-UGAGC--UCGAGCC-GGUU-GCGc -5'
7679 3' -53.8 NC_001973.1 + 7115 0.71 0.775266
Target:  5'- -gUCGuGCUCGAGUgCGGCCuguuuuucucgcGACGCGg -3'
miRNA:   3'- cgAGUuUGAGCUCGaGCCGG------------UUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 7250 0.7 0.853545
Target:  5'- -gUCGAGCagaugcgcagCGGGCUCGGCgcgCGGCGCGc -3'
miRNA:   3'- cgAGUUUGa---------GCUCGAGCCG---GUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 7431 0.74 0.624897
Target:  5'- aGUUCAagGACUCgcacguGAGCUCGGCggugCGGCGCGa -3'
miRNA:   3'- -CGAGU--UUGAG------CUCGAGCCG----GUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 11588 0.66 0.971517
Target:  5'- uGCUCAugcuguACUCGccCUCGGCgCAAaGCGu -3'
miRNA:   3'- -CGAGUu-----UGAGCucGAGCCG-GUUgCGC- -5'
7679 3' -53.8 NC_001973.1 + 12103 0.94 0.049051
Target:  5'- uGCcCAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 12182 0.78 0.402336
Target:  5'- uGCcUAAACU-GAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAgCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 12260 0.7 0.82901
Target:  5'- uGCcUAAAC-CcAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGaGcUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 12338 0.94 0.049051
Target:  5'- uGCcCAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 12419 0.89 0.107164
Target:  5'- --cCAAACUUGAGCUCGGCUGACGCGu -3'
miRNA:   3'- cgaGUUUGAGCUCGAGCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 14542 0.68 0.903416
Target:  5'- -aUCAAACguucguUCGAcgGC-CGGCCGGCGCa -3'
miRNA:   3'- cgAGUUUG------AGCU--CGaGCCGGUUGCGc -5'
7679 3' -53.8 NC_001973.1 + 16351 0.91 0.073712
Target:  5'- cGCcUAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 16430 0.87 0.125502
Target:  5'- uGCUUc-GCUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGAGuuUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 16508 0.87 0.125502
Target:  5'- uGCUUc-GCUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGAGuuUGAGCUCGAGCCGgUUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.