miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 86452 0.67 0.841601
Target:  5'- gGCCgCGGCGGCGgcggaaGCGCg-CGcGCCCg -3'
miRNA:   3'- -CGG-GCUGCUGUag----UGCGgaGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 135933 0.67 0.841601
Target:  5'- gGCgCGGCGAUggCGCGCCaaGuGCgCCa -3'
miRNA:   3'- -CGgGCUGCUGuaGUGCGGagCuCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 139318 0.67 0.841601
Target:  5'- cGUCCG-CGGCGauagcguuuaUCACGCCggUCGcGUCCg -3'
miRNA:   3'- -CGGGCuGCUGU----------AGUGCGG--AGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 140884 0.67 0.841601
Target:  5'- aUCUGcGCGGCGUCGCGCg-CGAcccaGCCCu -3'
miRNA:   3'- cGGGC-UGCUGUAGUGCGgaGCU----CGGG- -5'
7681 5' -57.9 NC_001973.1 + 147914 0.67 0.841601
Target:  5'- cGCCUcuuGACGGCGcUUGCGUUUCGAGuguuCCCu -3'
miRNA:   3'- -CGGG---CUGCUGU-AGUGCGGAGCUC----GGG- -5'
7681 5' -57.9 NC_001973.1 + 157203 0.67 0.841601
Target:  5'- uGCCgGugGAUAUuucguagagcagCACGCCcaCG-GCCCa -3'
miRNA:   3'- -CGGgCugCUGUA------------GUGCGGa-GCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 123739 0.67 0.836848
Target:  5'- cGCgCGGCGagaucgcaaccGCAUCACGCacgagucgaucggCGAGCUCa -3'
miRNA:   3'- -CGgGCUGC-----------UGUAGUGCGga-----------GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 83446 0.67 0.833644
Target:  5'- cGCCCGguGCGACAgcgcCGCGCUcgUCGAGg-- -3'
miRNA:   3'- -CGGGC--UGCUGUa---GUGCGG--AGCUCggg -5'
7681 5' -57.9 NC_001973.1 + 158828 0.67 0.833644
Target:  5'- -gCCGGCGGCcgagCGCGCggaCGAGCCg -3'
miRNA:   3'- cgGGCUGCUGua--GUGCGga-GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 84178 0.67 0.833644
Target:  5'- gGCgCCGcCGACcugcaaaaucgcAUCGCGCgaCUCGAGgCCg -3'
miRNA:   3'- -CG-GGCuGCUG------------UAGUGCG--GAGCUCgGG- -5'
7681 5' -57.9 NC_001973.1 + 51530 0.67 0.831223
Target:  5'- gGCUguCGGCGAUAaauuucauguuaauUCGCGCCcgggcuauuuaaUCGAGCCg -3'
miRNA:   3'- -CGG--GCUGCUGU--------------AGUGCGG------------AGCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 111007 0.67 0.828787
Target:  5'- uGCgCGACGugAgcaucgcgugccugcUCACGCCgcaCGAGUaCCa -3'
miRNA:   3'- -CGgGCUGCugU---------------AGUGCGGa--GCUCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 107314 0.67 0.828787
Target:  5'- gGCCCGAUG-CuggCGCGCCUgGAaggcggagcgcgcacGUCCa -3'
miRNA:   3'- -CGGGCUGCuGua-GUGCGGAgCU---------------CGGG- -5'
7681 5' -57.9 NC_001973.1 + 31956 0.67 0.825515
Target:  5'- aGCCCGAgcACGUagCGCaCCUCGGGCUg -3'
miRNA:   3'- -CGGGCUgcUGUA--GUGcGGAGCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 128480 0.67 0.825515
Target:  5'- uGUCCGACGGCGcguccuugcUCAUGCUguaCucGCCCu -3'
miRNA:   3'- -CGGGCUGCUGU---------AGUGCGGa--GcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 23188 0.67 0.825515
Target:  5'- uGCCUgcacgaGAUGACG-CGCGCCgaCGAGCgCg -3'
miRNA:   3'- -CGGG------CUGCUGUaGUGCGGa-GCUCGgG- -5'
7681 5' -57.9 NC_001973.1 + 20442 0.67 0.825515
Target:  5'- uGUCCGACGGCGcgucucugcUCAUGCUguaCucGCCCu -3'
miRNA:   3'- -CGGGCUGCUGU---------AGUGCGGa--GcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 11570 0.67 0.825515
Target:  5'- uGUCCGACGGCGcguccuugcUCAUGCUguaCucGCCCu -3'
miRNA:   3'- -CGGGCUGCUGU---------AGUGCGGa--GcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 144717 0.67 0.825515
Target:  5'- cGUCCGAgGACAUCgaGCGCCaggCGgcggcggaggcGGCCg -3'
miRNA:   3'- -CGGGCUgCUGUAG--UGCGGa--GC-----------UCGGg -5'
7681 5' -57.9 NC_001973.1 + 133687 0.67 0.825515
Target:  5'- -aCCGGCGACAgUAgGCCUCGuugaacucGCCg -3'
miRNA:   3'- cgGGCUGCUGUaGUgCGGAGCu-------CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.