miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 16180 0.66 0.856972
Target:  5'- cGCCCGuguCGGCG-CAgGCCgcuaGAGCgCg -3'
miRNA:   3'- -CGGGCu--GCUGUaGUgCGGag--CUCGgG- -5'
7681 5' -57.9 NC_001973.1 + 16337 0.87 0.071802
Target:  5'- aUCCGAUGACAUCACGCCuaaacUCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 16415 0.91 0.042527
Target:  5'- aGCCCGAUGACAUCAUGCuucgCUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCG----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 16493 0.91 0.042527
Target:  5'- aGCCCGAUGACAUCAUGCuucgCUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCG----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 16571 0.73 0.483936
Target:  5'- aGCCCGAUGAgAUCAUGCCgccgaUGAGaucauuCCCa -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGa----GCUC------GGG- -5'
7681 5' -57.9 NC_001973.1 + 17262 0.7 0.648698
Target:  5'- gGCCgCGGCGGC--CGCGCaCUCGGGCa- -3'
miRNA:   3'- -CGG-GCUGCUGuaGUGCG-GAGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 17340 0.78 0.255211
Target:  5'- uCCCGugGGgGUCACGCCgauuucgcggCGAGCCg -3'
miRNA:   3'- cGGGCugCUgUAGUGCGGa---------GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 17451 0.68 0.800168
Target:  5'- -gCCGaACGGCggCAUGCaCUCGAGCaugCCg -3'
miRNA:   3'- cgGGC-UGCUGuaGUGCG-GAGCUCG---GG- -5'
7681 5' -57.9 NC_001973.1 + 18757 0.68 0.791423
Target:  5'- cGUUgGACGACAUCAacgGCUUUGuuaaauuGCCCa -3'
miRNA:   3'- -CGGgCUGCUGUAGUg--CGGAGCu------CGGG- -5'
7681 5' -57.9 NC_001973.1 + 19671 0.68 0.773537
Target:  5'- uGCCUuuuauuCGAaAUCGCGCCUCG-GCCg -3'
miRNA:   3'- -CGGGcu----GCUgUAGUGCGGAGCuCGGg -5'
7681 5' -57.9 NC_001973.1 + 20121 0.67 0.825515
Target:  5'- gGUCCGAgGGCuuggugAUUACGUCUUGAGCg- -3'
miRNA:   3'- -CGGGCUgCUG------UAGUGCGGAGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 20442 0.67 0.825515
Target:  5'- uGUCCGACGGCGcgucucugcUCAUGCUguaCucGCCCu -3'
miRNA:   3'- -CGGGCUGCUGU---------AGUGCGGa--GcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 21039 0.85 0.097846
Target:  5'- -aCCGAUGACAUCAUGCC-CGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGGaGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 21138 0.75 0.388456
Target:  5'- -aCCGAUGAgAUCAUGCuucgCUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUgUAGUGCG----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 21214 0.75 0.380404
Target:  5'- aGCCCGAUGACAUCAUGCCgaacUCG-GUg- -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGG----AGCuCGgg -5'
7681 5' -57.9 NC_001973.1 + 23188 0.67 0.825515
Target:  5'- uGCCUgcacgaGAUGACG-CGCGCCgaCGAGCgCg -3'
miRNA:   3'- -CGGG------CUGCUGUaGUGCGGa-GCUCGgG- -5'
7681 5' -57.9 NC_001973.1 + 23739 0.78 0.286214
Target:  5'- gGCCCGACGGCGacCGCGCC-CG-GCCUc -3'
miRNA:   3'- -CGGGCUGCUGUa-GUGCGGaGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 24108 0.67 0.817222
Target:  5'- --aCGGCGACGUguCGCUgagccgggCGAGCUCg -3'
miRNA:   3'- cggGCUGCUGUAguGCGGa-------GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 24214 0.66 0.878583
Target:  5'- cCCCGAguaCGAguUCACGCCUCacaauuucCCCg -3'
miRNA:   3'- cGGGCU---GCUguAGUGCGGAGcuc-----GGG- -5'
7681 5' -57.9 NC_001973.1 + 25090 0.67 0.849379
Target:  5'- -aCCGACcgguGCAgCACGCUcaUCGAGaCCCa -3'
miRNA:   3'- cgGGCUGc---UGUaGUGCGG--AGCUC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.