miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 568 0.67 0.849379
Target:  5'- cGCCCaGCGACGg---GCa-CGAGCCCg -3'
miRNA:   3'- -CGGGcUGCUGUagugCGgaGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 1127 0.66 0.855468
Target:  5'- cGCCCcuuuauaGUCGCGCCUCG-GCuCCg -3'
miRNA:   3'- -CGGGcugcug-UAGUGCGGAGCuCG-GG- -5'
7681 5' -57.9 NC_001973.1 + 2660 0.88 0.061416
Target:  5'- -aCCGAUGACAUCACGCC-CGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGGaGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 2737 0.83 0.136005
Target:  5'- aGCCCGAUGAgAUCACGCCa--AGCCCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGagcUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 2777 0.87 0.075626
Target:  5'- aGCCCGAUGAgAUCACGCCUaaauUGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 2855 0.78 0.279784
Target:  5'- aGCCCGAUGAgAUCAUGCUUUGAucacGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGAGCU----CGGG- -5'
7681 5' -57.9 NC_001973.1 + 3581 0.75 0.372465
Target:  5'- -aCCGACGGCG-CGCGCUUCG-GCUCg -3'
miRNA:   3'- cgGGCUGCUGUaGUGCGGAGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 6369 0.7 0.668477
Target:  5'- aGCCUuGCGAgucgAUCGCGCUUCGAGCa- -3'
miRNA:   3'- -CGGGcUGCUg---UAGUGCGGAGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 6416 0.74 0.421757
Target:  5'- uGCgCGGCGGCggCGCGCCgacgagCGcGCCCg -3'
miRNA:   3'- -CGgGCUGCUGuaGUGCGGa-----GCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 7841 0.69 0.717301
Target:  5'- -aCgGGCGGCGcCGCGCCcgUCGAGCUg -3'
miRNA:   3'- cgGgCUGCUGUaGUGCGG--AGCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 8193 0.7 0.648698
Target:  5'- cGCgCCGACGGCAccgcuUgGCGCCgcuGGGCCg -3'
miRNA:   3'- -CG-GGCUGCUGU-----AgUGCGGag-CUCGGg -5'
7681 5' -57.9 NC_001973.1 + 9098 0.68 0.773537
Target:  5'- aGCUCGGCGcGCAUcCGCGCCgCGuugcGCUCg -3'
miRNA:   3'- -CGGGCUGC-UGUA-GUGCGGaGCu---CGGG- -5'
7681 5' -57.9 NC_001973.1 + 9813 0.72 0.578476
Target:  5'- gGCCaCGACGGCGUCGuCGgagaaggcgcuuuCCUCGcgcGCCCa -3'
miRNA:   3'- -CGG-GCUGCUGUAGU-GC-------------GGAGCu--CGGG- -5'
7681 5' -57.9 NC_001973.1 + 10545 0.67 0.80877
Target:  5'- gGCUCGACGACGugcUCGuCGCCguucUGcAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGU---AGU-GCGGa---GC-UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 11570 0.67 0.825515
Target:  5'- uGUCCGACGGCGcguccuugcUCAUGCUguaCucGCCCu -3'
miRNA:   3'- -CGGGCUGCUGU---------AGUGCGGa--GcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 12089 0.87 0.07761
Target:  5'- uCCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 12167 0.84 0.11993
Target:  5'- aGCCCGAUGAgAUCAUGCCUaaacUGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 12245 0.84 0.122997
Target:  5'- aGCCCGAUGACAUCAUGCCUaaacccAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGGAgc----UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 12324 0.81 0.187423
Target:  5'- aCCCGAUGAgAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUgUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 12480 0.73 0.502505
Target:  5'- aGCCCGAUGAgAUCAUGCCcUCcGGCg- -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGG-AGcUCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.