miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 127311 1.14 0.001204
Target:  5'- gGCCCGACGACAUCACGCCUCGAGCCCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130928 0.92 0.034421
Target:  5'- aGCCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160597 0.92 0.034421
Target:  5'- aGCCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 16415 0.91 0.042527
Target:  5'- aGCCCGAUGACAUCAUGCuucgCUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCG----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 16493 0.91 0.042527
Target:  5'- aGCCCGAUGACAUCAUGCuucgCUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCG----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160362 0.88 0.059832
Target:  5'- aGCCCGAUGAgAUCACGCCcaagcUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 2660 0.88 0.061416
Target:  5'- -aCCGAUGACAUCACGCC-CGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGGaGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 29926 0.88 0.06304
Target:  5'- aGCUCGGCGcGCAUCAcuccaaaccCGCCUCGAGCCCg -3'
miRNA:   3'- -CGGGCUGC-UGUAGU---------GCGGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130596 0.88 0.068165
Target:  5'- aCCCGAUGACAUCAUGCCUaaacCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 129203 0.87 0.069961
Target:  5'- aCCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130850 0.87 0.069961
Target:  5'- aCCCGAUGACAUCAUGCCuaaacUCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 16337 0.87 0.071802
Target:  5'- aUCCGAUGACAUCACGCCuaaacUCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160519 0.87 0.075626
Target:  5'- aGCCCGAUGAgAUCACGCCUaaacUGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 2777 0.87 0.075626
Target:  5'- aGCCCGAUGAgAUCACGCCUaaauUGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 12089 0.87 0.07761
Target:  5'- uCCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160776 0.86 0.081729
Target:  5'- -aCCGAUGACAUCACGCCcaagcUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160442 0.86 0.0883
Target:  5'- aCCCGAUGACAUCAUGCCUaaacUGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 127490 0.86 0.0883
Target:  5'- aCCCGAUGACAUCAUGCCUaaacUGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130673 0.85 0.095372
Target:  5'- aGCCCGAUGAgAUCAUGCCuaaacUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 21039 0.85 0.097846
Target:  5'- -aCCGAUGACAUCAUGCC-CGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGGaGCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.