miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7685 5' -64.6 NC_001973.1 + 123073 1.07 0.000749
Target:  5'- uCUCGCCCGGGCGAGCAGCUCGCCCGAc -3'
miRNA:   3'- -GAGCGGGCCCGCUCGUCGAGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 133478 0.77 0.107657
Target:  5'- -gCGCCagCGGGCGAGCAcGCUCGCgCCGu -3'
miRNA:   3'- gaGCGG--GCCCGCUCGU-CGAGCG-GGCu -5'
7685 5' -64.6 NC_001973.1 + 109152 0.76 0.137543
Target:  5'- cCUCGacgagCCGGGCGAGCcGgUCGCCCGc -3'
miRNA:   3'- -GAGCg----GGCCCGCUCGuCgAGCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 51560 0.75 0.162815
Target:  5'- -gCGCCCGGGCuauuuaaucGAGCcgGGCgCGCCCGGg -3'
miRNA:   3'- gaGCGGGCCCG---------CUCG--UCGaGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 83443 0.75 0.16675
Target:  5'- gCUCGCCCGGuGCGA-CAGCgccgCGCUCGu -3'
miRNA:   3'- -GAGCGGGCC-CGCUcGUCGa---GCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 44592 0.74 0.178646
Target:  5'- --aGCCCGcggcggcGGCGAGCgGGCUCGgCCCGAc -3'
miRNA:   3'- gagCGGGC-------CCGCUCG-UCGAGC-GGGCU- -5'
7685 5' -64.6 NC_001973.1 + 51460 0.73 0.218943
Target:  5'- --aGCCCGGGCGAGCucgAGCggccgggucgaugCGCUCGGa -3'
miRNA:   3'- gagCGGGCCCGCUCG---UCGa------------GCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 53850 0.72 0.236694
Target:  5'- gCUCGCCCcGGCG-GCGGCggCGCCgcCGAg -3'
miRNA:   3'- -GAGCGGGcCCGCuCGUCGa-GCGG--GCU- -5'
7685 5' -64.6 NC_001973.1 + 46492 0.71 0.264972
Target:  5'- gUCGCCCGcGCGGaCGGCcucggCGCCCGAc -3'
miRNA:   3'- gAGCGGGCcCGCUcGUCGa----GCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 6941 0.71 0.283218
Target:  5'- -gCGCCUGgaccGGCGcacggccuccGGCuGCUCGCCCGAa -3'
miRNA:   3'- gaGCGGGC----CCGC----------UCGuCGAGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 95561 0.7 0.309073
Target:  5'- aUCGCCgucguggacuaCGGGCGcGCGcaccGCUCGCUCGAc -3'
miRNA:   3'- gAGCGG-----------GCCCGCuCGU----CGAGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 35980 0.7 0.322661
Target:  5'- uUCGCCgCGGacgagGUGAGCGGCaUGCCCGc -3'
miRNA:   3'- gAGCGG-GCC-----CGCUCGUCGaGCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 70355 0.7 0.32962
Target:  5'- uUCGa-CGGGCGAGCGGC-CGCUgGGu -3'
miRNA:   3'- gAGCggGCCCGCUCGUCGaGCGGgCU- -5'
7685 5' -64.6 NC_001973.1 + 77663 0.7 0.33669
Target:  5'- uUgGCCaccgaccGGCaGAGguGCUCGCCCGAc -3'
miRNA:   3'- gAgCGGgc-----CCG-CUCguCGAGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 90316 0.7 0.343869
Target:  5'- gUCGgC-GGGCGAgGCGGUgCGCCCGAu -3'
miRNA:   3'- gAGCgGgCCCGCU-CGUCGaGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 55751 0.69 0.351158
Target:  5'- aCUCGCUCGGGaacgaGGGCAGaUCGUCuCGGc -3'
miRNA:   3'- -GAGCGGGCCCg----CUCGUCgAGCGG-GCU- -5'
7685 5' -64.6 NC_001973.1 + 70122 0.69 0.369094
Target:  5'- -gCGCCCGcGGCGAugucgagcauggugcGCAGCgCGUCCGc -3'
miRNA:   3'- gaGCGGGC-CCGCU---------------CGUCGaGCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 56532 0.69 0.373676
Target:  5'- --aGCUCGGGCgGGGCgGGCUCgGCgCCGAg -3'
miRNA:   3'- gagCGGGCCCG-CUCG-UCGAG-CG-GGCU- -5'
7685 5' -64.6 NC_001973.1 + 76457 0.69 0.381396
Target:  5'- cCUCGCCaaGGacauGGGCGGCUCggcgguGCCCGAc -3'
miRNA:   3'- -GAGCGGgcCCg---CUCGUCGAG------CGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 121299 0.69 0.381396
Target:  5'- gUCGCCCGcGGCGcGCgccGGCggaCGCgCCGAc -3'
miRNA:   3'- gAGCGGGC-CCGCuCG---UCGa--GCG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.