miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7685 5' -64.6 NC_001973.1 + 6941 0.71 0.283218
Target:  5'- -gCGCCUGgaccGGCGcacggccuccGGCuGCUCGCCCGAa -3'
miRNA:   3'- gaGCGGGC----CCGC----------UCGuCGAGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 10455 0.68 0.438321
Target:  5'- -cCGCCCGucucGGCcAGCAGCcacaCGCCCGu -3'
miRNA:   3'- gaGCGGGC----CCGcUCGUCGa---GCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 23728 0.67 0.50891
Target:  5'- gCUCGCUgaCGGGCccGaCGGCgaccgCGCCCGGc -3'
miRNA:   3'- -GAGCGG--GCCCGcuC-GUCGa----GCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 24118 0.69 0.397153
Target:  5'- gUCGCugagCCGGGCGAGCucgcggguGCgcgcgcCGCCCGc -3'
miRNA:   3'- gAGCG----GGCCCGCUCGu-------CGa-----GCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 24525 0.67 0.490779
Target:  5'- aCUCGagcgucaauuuUgCGGGCGAGaAGCUCGCCgaCGAg -3'
miRNA:   3'- -GAGC-----------GgGCCCGCUCgUCGAGCGG--GCU- -5'
7685 5' -64.6 NC_001973.1 + 25926 0.68 0.421558
Target:  5'- gCUCGCCgccgCGGGCGGGCucg-CGgCCGAg -3'
miRNA:   3'- -GAGCGG----GCCCGCUCGucgaGCgGGCU- -5'
7685 5' -64.6 NC_001973.1 + 34917 0.67 0.497091
Target:  5'- aUCGCUuccgUGGcGCGAGCgAGCUCGCgaccuacuccaccgCCGAg -3'
miRNA:   3'- gAGCGG----GCC-CGCUCG-UCGAGCG--------------GGCU- -5'
7685 5' -64.6 NC_001973.1 + 35980 0.7 0.322661
Target:  5'- uUCGCCgCGGacgagGUGAGCGGCaUGCCCGc -3'
miRNA:   3'- gAGCGG-GCC-----CGCUCGUCGaGCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 37254 0.66 0.545967
Target:  5'- --aGCCCGGaGaCGAGC--CUCGCCaCGAg -3'
miRNA:   3'- gagCGGGCC-C-GCUCGucGAGCGG-GCU- -5'
7685 5' -64.6 NC_001973.1 + 37350 0.66 0.545967
Target:  5'- --aGCCCGGaGaCGAGC--CUCGCCaCGAg -3'
miRNA:   3'- gagCGGGCC-C-GCUCGucGAGCGG-GCU- -5'
7685 5' -64.6 NC_001973.1 + 37374 0.66 0.545967
Target:  5'- --aGCCCGGaGaCGAGC--CUCGCCaCGAg -3'
miRNA:   3'- gagCGGGCC-C-GCUCGucGAGCGG-GCU- -5'
7685 5' -64.6 NC_001973.1 + 44592 0.74 0.178646
Target:  5'- --aGCCCGcggcggcGGCGAGCgGGCUCGgCCCGAc -3'
miRNA:   3'- gagCGGGC-------CCGCUCG-UCGAGC-GGGCU- -5'
7685 5' -64.6 NC_001973.1 + 46492 0.71 0.264972
Target:  5'- gUCGCCCGcGCGGaCGGCcucggCGCCCGAc -3'
miRNA:   3'- gAGCGGGCcCGCUcGUCGa----GCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 51460 0.73 0.218943
Target:  5'- --aGCCCGGGCGAGCucgAGCggccgggucgaugCGCUCGGa -3'
miRNA:   3'- gagCGGGCCCGCUCG---UCGa------------GCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 51560 0.75 0.162815
Target:  5'- -gCGCCCGGGCuauuuaaucGAGCcgGGCgCGCCCGGg -3'
miRNA:   3'- gaGCGGGCCCG---------CUCG--UCGaGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 53399 0.66 0.545967
Target:  5'- cCUCGCCCGccGGCacGGGCGGagCGCCgGGc -3'
miRNA:   3'- -GAGCGGGC--CCG--CUCGUCgaGCGGgCU- -5'
7685 5' -64.6 NC_001973.1 + 53850 0.72 0.236694
Target:  5'- gCUCGCCCcGGCG-GCGGCggCGCCgcCGAg -3'
miRNA:   3'- -GAGCGGGcCCGCuCGUCGa-GCGG--GCU- -5'
7685 5' -64.6 NC_001973.1 + 55751 0.69 0.351158
Target:  5'- aCUCGCUCGGGaacgaGGGCAGaUCGUCuCGGc -3'
miRNA:   3'- -GAGCGGGCCCg----CUCGUCgAGCGG-GCU- -5'
7685 5' -64.6 NC_001973.1 + 56532 0.69 0.373676
Target:  5'- --aGCUCGGGCgGGGCgGGCUCgGCgCCGAg -3'
miRNA:   3'- gagCGGGCCCG-CUCG-UCGAG-CG-GGCU- -5'
7685 5' -64.6 NC_001973.1 + 57324 0.66 0.545967
Target:  5'- gCUCGUCCGcGGCcucguccgaGGGCAGCUC-UUCGAc -3'
miRNA:   3'- -GAGCGGGC-CCG---------CUCGUCGAGcGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.