miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7697 3' -55.6 NC_001973.1 + 31983 0.7 0.759431
Target:  5'- uGCGCGccgaucUCCGCCGcGCUCAGgccguGCa -3'
miRNA:   3'- -UGCGC------AGGCGGCuCGAGUCaaaucCG- -5'
7697 3' -55.6 NC_001973.1 + 33399 0.68 0.855373
Target:  5'- gACGCGUCCGCgcaauccauCGucAGCUCGGUguc-GCg -3'
miRNA:   3'- -UGCGCAGGCG---------GC--UCGAGUCAaaucCG- -5'
7697 3' -55.6 NC_001973.1 + 40759 0.71 0.710642
Target:  5'- gACGCG-CUGCCc-GCUCGcUUUAGGCg -3'
miRNA:   3'- -UGCGCaGGCGGcuCGAGUcAAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 40866 1.05 0.006328
Target:  5'- uACGCGUCCGCCGAGCUCgAGUUUAGGCa -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 40944 1.05 0.006328
Target:  5'- uACGCGUCCGCCGAGCUCgAGUUUAGGCa -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 41023 1.05 0.006505
Target:  5'- uACGCGUCCGCCGAGCUCAGUUUGGGg -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAGUCAAAUCCg -5'
7697 3' -55.6 NC_001973.1 + 41102 0.91 0.049647
Target:  5'- uACGCGUCCGCCGAGCUCgAGUUUGGuCa -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAG-UCAAAUCcG- -5'
7697 3' -55.6 NC_001973.1 + 51656 0.67 0.891556
Target:  5'- -gGCGaCCGCCGAGgaCGcGg--AGGCg -3'
miRNA:   3'- ugCGCaGGCGGCUCgaGU-CaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 53865 0.7 0.768889
Target:  5'- -gGCGgcgCCGCCGAGCgcggCGGccguGGCc -3'
miRNA:   3'- ugCGCa--GGCGGCUCGa---GUCaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 56400 0.69 0.814182
Target:  5'- uCGgGcUCgaaGCCGAGCUCGGUaucGGGCu -3'
miRNA:   3'- uGCgC-AGg--CGGCUCGAGUCAaa-UCCG- -5'
7697 3' -55.6 NC_001973.1 + 56462 0.66 0.9275
Target:  5'- gGCGgGcUCggCGCCaAGCUCGGgcgGGGCg -3'
miRNA:   3'- -UGCgC-AG--GCGGcUCGAGUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 56516 0.66 0.9275
Target:  5'- gGCGgGcUCggCGCCaAGCUCGGgcgGGGCg -3'
miRNA:   3'- -UGCgC-AG--GCGGcUCGAGUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 71761 0.71 0.680498
Target:  5'- cGCGcCGggccccgCCGCCGAGCUCG----AGGCc -3'
miRNA:   3'- -UGC-GCa------GGCGGCUCGAGUcaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 80788 0.72 0.63979
Target:  5'- gACGCGcauUUCGCUGAGCgucuucaaCAGUUUGGGg -3'
miRNA:   3'- -UGCGC---AGGCGGCUCGa-------GUCAAAUCCg -5'
7697 3' -55.6 NC_001973.1 + 83875 0.68 0.855373
Target:  5'- cGCGCG-CgGCgCGAGCUCAGgg-AGcaGCa -3'
miRNA:   3'- -UGCGCaGgCG-GCUCGAGUCaaaUC--CG- -5'
7697 3' -55.6 NC_001973.1 + 84311 0.69 0.814182
Target:  5'- cCGCGUCCGCCGcccaggacgucAGCUaCGGcc--GGCu -3'
miRNA:   3'- uGCGCAGGCGGC-----------UCGA-GUCaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 95744 0.73 0.568604
Target:  5'- gGCGCGcCCGCCGAcaagaucguGCUCGGcgu-GGCc -3'
miRNA:   3'- -UGCGCaGGCGGCU---------CGAGUCaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 96031 0.71 0.720569
Target:  5'- uACGCG--CG-CGAGCUCGGgcUGGGCg -3'
miRNA:   3'- -UGCGCagGCgGCUCGAGUCaaAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 104246 0.69 0.82278
Target:  5'- uGCGCGUCCGUCagcuGUUCGGcggcGGCg -3'
miRNA:   3'- -UGCGCAGGCGGcu--CGAGUCaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 105938 0.66 0.910585
Target:  5'- --uCGUCCGCguCGAGCUUcuucaGGUgcacgUAGGCg -3'
miRNA:   3'- ugcGCAGGCG--GCUCGAG-----UCAa----AUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.