miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7697 3' -55.6 NC_001973.1 + 1806 0.69 0.805419
Target:  5'- aACGCGUacugguccCCGCCGAGCgcgcacaCGGcc-AGGCu -3'
miRNA:   3'- -UGCGCA--------GGCGGCUCGa------GUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 2708 0.69 0.814182
Target:  5'- uACGCGUCgGCCGGGgUCGauc-GGGUu -3'
miRNA:   3'- -UGCGCAGgCGGCUCgAGUcaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 2826 0.69 0.814182
Target:  5'- uACGCGUCgGCCGGGgUCGauc-GGGUu -3'
miRNA:   3'- -UGCGCAGgCGGCUCgAGUcaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 4224 0.7 0.748898
Target:  5'- gGCGCGcCUGCCGGcGCUC-GUUUGcgugagcGGCg -3'
miRNA:   3'- -UGCGCaGGCGGCU-CGAGuCAAAU-------CCG- -5'
7697 3' -55.6 NC_001973.1 + 4861 0.73 0.598982
Target:  5'- gGCGCGacguuUCCGCCGuGCUCGuacaaGGGCa -3'
miRNA:   3'- -UGCGC-----AGGCGGCuCGAGUcaaa-UCCG- -5'
7697 3' -55.6 NC_001973.1 + 5434 0.73 0.558558
Target:  5'- uCGCGUCCaaggaGCCGAGCUCGGgca--GCa -3'
miRNA:   3'- uGCGCAGG-----CGGCUCGAGUCaaaucCG- -5'
7697 3' -55.6 NC_001973.1 + 7103 0.72 0.629577
Target:  5'- cGCGCGaCCGCCGucguGCUCgAGUgc-GGCc -3'
miRNA:   3'- -UGCGCaGGCGGCu---CGAG-UCAaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 7851 0.67 0.884755
Target:  5'- cCGCGcCCGUCGAGCUgGcgcgccaGGGCg -3'
miRNA:   3'- uGCGCaGGCGGCUCGAgUcaaa---UCCG- -5'
7697 3' -55.6 NC_001973.1 + 11257 0.66 0.932663
Target:  5'- aACGCGUacugguccCCGCCGAGCgcgCAcac--GGCc -3'
miRNA:   3'- -UGCGCA--------GGCGGCUCGa--GUcaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 12138 0.67 0.87049
Target:  5'- uACGCGUCUGCCGGGgUCAa------- -3'
miRNA:   3'- -UGCGCAGGCGGCUCgAGUcaaauccg -5'
7697 3' -55.6 NC_001973.1 + 12513 0.69 0.82278
Target:  5'- uACGCGUCgGCCG-GCUCAaaUUGaacGGUa -3'
miRNA:   3'- -UGCGCAGgCGGCuCGAGUcaAAU---CCG- -5'
7697 3' -55.6 NC_001973.1 + 19714 0.66 0.916461
Target:  5'- uACGCGUCgGCCGgAGCUC----UAGaGUa -3'
miRNA:   3'- -UGCGCAGgCGGC-UCGAGucaaAUC-CG- -5'
7697 3' -55.6 NC_001973.1 + 20066 0.69 0.805419
Target:  5'- aACGCGUacugguccCCGCCGAGCgagcacaCGGcc-AGGCu -3'
miRNA:   3'- -UGCGCA--------GGCGGCUCGa------GUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 21185 0.69 0.814182
Target:  5'- uACGCGUCgGCCGGGgUCGauc-GGGUu -3'
miRNA:   3'- -UGCGCAGgCGGCUCgAGUcaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 21280 0.79 0.285618
Target:  5'- -gGCGUCCGCCGGGCcgucgcUCAGUcgucGGGCu -3'
miRNA:   3'- ugCGCAGGCGGCUCG------AGUCAaa--UCCG- -5'
7697 3' -55.6 NC_001973.1 + 23204 0.69 0.787432
Target:  5'- cGCGCG-CCGaCGAGCgcgCAGUggcgcaGGGCc -3'
miRNA:   3'- -UGCGCaGGCgGCUCGa--GUCAaa----UCCG- -5'
7697 3' -55.6 NC_001973.1 + 23710 0.71 0.690598
Target:  5'- uGCGCGccaagCCGCUGGGCUCGcugacGGGCc -3'
miRNA:   3'- -UGCGCa----GGCGGCUCGAGUcaaa-UCCG- -5'
7697 3' -55.6 NC_001973.1 + 26270 0.66 0.916461
Target:  5'- -aGCGUCCGCuuccaaCGAGCUCucc---GGCu -3'
miRNA:   3'- ugCGCAGGCG------GCUCGAGucaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 29958 0.69 0.805419
Target:  5'- aGCcCGUacagagaCGCCG-GCUCGGUggUGGGCg -3'
miRNA:   3'- -UGcGCAg------GCGGCuCGAGUCAa-AUCCG- -5'
7697 3' -55.6 NC_001973.1 + 30348 0.66 0.937588
Target:  5'- uCGCG-CagGCCGAGUUCGGgccgccGGCg -3'
miRNA:   3'- uGCGCaGg-CGGCUCGAGUCaaau--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.