miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7697 3' -55.6 NC_001973.1 + 40944 1.05 0.006328
Target:  5'- uACGCGUCCGCCGAGCUCgAGUUUAGGCa -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 40866 1.05 0.006328
Target:  5'- uACGCGUCCGCCGAGCUCgAGUUUAGGCa -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 41023 1.05 0.006505
Target:  5'- uACGCGUCCGCCGAGCUCAGUUUGGGg -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAGUCAAAUCCg -5'
7697 3' -55.6 NC_001973.1 + 114992 1.04 0.006875
Target:  5'- uACGCGUCCGCCGAGCUCgAGUUUGGGCa -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 114836 1.04 0.006875
Target:  5'- uACGCGUCCGCCGAGCUCgAGUUUGGGCa -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 114760 0.99 0.015742
Target:  5'- uACGCGUCCG-CGAGCUCAGUUUAGGCg -3'
miRNA:   3'- -UGCGCAGGCgGCUCGAGUCAAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 114604 0.98 0.018569
Target:  5'- uACGCGUCCGCCGAGCUCAaGUUaAGGCa -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAGU-CAAaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 114682 0.97 0.021897
Target:  5'- uACGCGcCCGCCGAGCUCgAGUUUGGGCg -3'
miRNA:   3'- -UGCGCaGGCGGCUCGAG-UCAAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 114914 0.93 0.037843
Target:  5'- uACGCGUCCaCCGAGCUCgAGUUUGGGCa -3'
miRNA:   3'- -UGCGCAGGcGGCUCGAG-UCAAAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 41102 0.91 0.049647
Target:  5'- uACGCGUCCGCCGAGCUCgAGUUUGGuCa -3'
miRNA:   3'- -UGCGCAGGCGGCUCGAG-UCAAAUCcG- -5'
7697 3' -55.6 NC_001973.1 + 150925 0.8 0.253788
Target:  5'- uACGCGUCCGCCGGGgUC-GUUggAGGUc -3'
miRNA:   3'- -UGCGCAGGCGGCUCgAGuCAAa-UCCG- -5'
7697 3' -55.6 NC_001973.1 + 21280 0.79 0.285618
Target:  5'- -gGCGUCCGCCGGGCcgucgcUCAGUcgucGGGCu -3'
miRNA:   3'- ugCGCAGGCGGCUCG------AGUCAaa--UCCG- -5'
7697 3' -55.6 NC_001973.1 + 115052 0.75 0.456241
Target:  5'- -gGCGUCCGCCGAGCUCGagcaaacccgauuccGgccucGGCg -3'
miRNA:   3'- ugCGCAGGCGGCUCGAGU---------------Caaau-CCG- -5'
7697 3' -55.6 NC_001973.1 + 5434 0.73 0.558558
Target:  5'- uCGCGUCCaaggaGCCGAGCUCGGgca--GCa -3'
miRNA:   3'- uGCGCAGG-----CGGCUCGAGUCaaaucCG- -5'
7697 3' -55.6 NC_001973.1 + 95744 0.73 0.568604
Target:  5'- gGCGCGcCCGCCGAcaagaucguGCUCGGcgu-GGCc -3'
miRNA:   3'- -UGCGCaGGCGGCU---------CGAGUCaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 151092 0.73 0.578694
Target:  5'- uACGCGcCCGCCGGGgUC-GUUUgAGGUu -3'
miRNA:   3'- -UGCGCaGGCGGCUCgAGuCAAA-UCCG- -5'
7697 3' -55.6 NC_001973.1 + 4861 0.73 0.598982
Target:  5'- gGCGCGacguuUCCGCCGuGCUCGuacaaGGGCa -3'
miRNA:   3'- -UGCGC-----AGGCGGCuCGAGUcaaa-UCCG- -5'
7697 3' -55.6 NC_001973.1 + 7103 0.72 0.629577
Target:  5'- cGCGCGaCCGCCGucguGCUCgAGUgc-GGCc -3'
miRNA:   3'- -UGCGCaGGCGGCu---CGAG-UCAaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 80788 0.72 0.63979
Target:  5'- gACGCGcauUUCGCUGAGCgucuucaaCAGUUUGGGg -3'
miRNA:   3'- -UGCGC---AGGCGGCUCGa-------GUCAAAUCCg -5'
7697 3' -55.6 NC_001973.1 + 71761 0.71 0.680498
Target:  5'- cGCGcCGggccccgCCGCCGAGCUCG----AGGCc -3'
miRNA:   3'- -UGC-GCa------GGCGGCUCGAGUcaaaUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.