Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
770 | 3' | -43.8 | NC_000852.3 | + | 121023 | 0.72 | 0.999949 |
Target: 5'- --cUGAaauUACAUGACAcuuuGAUGGCACGCg -3' miRNA: 3'- uuuACU---GUGUGCUGUu---UUACUGUGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 67919 | 0.67 | 1 |
Target: 5'- -uGUGGCAgAUGGaaaauuuauggucuuCAGGGUGAUACACg -3' miRNA: 3'- uuUACUGUgUGCU---------------GUUUUACUGUGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 217590 | 0.66 | 1 |
Target: 5'- ---aGACACACGACuucagGACAg-- -3' miRNA: 3'- uuuaCUGUGUGCUGuuuuaCUGUgug -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 329991 | 0.66 | 1 |
Target: 5'- ---cGugAUGCGGC-AGAUGACAC-Cg -3' miRNA: 3'- uuuaCugUGUGCUGuUUUACUGUGuG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 292686 | 0.7 | 0.999998 |
Target: 5'- -uAUGACAaaAUGACAAAAUGACAUu- -3' miRNA: 3'- uuUACUGUg-UGCUGUUUUACUGUGug -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 183621 | 0.7 | 0.999999 |
Target: 5'- aAAAUGACAcCAgGGUAAAAUGACACu- -3' miRNA: 3'- -UUUACUGU-GUgCUGUUUUACUGUGug -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 38670 | 0.69 | 0.999999 |
Target: 5'- ---cGAUGCACGACAAAuucuuuuucauucGUGACAUg- -3' miRNA: 3'- uuuaCUGUGUGCUGUUU-------------UACUGUGug -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 133263 | 0.69 | 0.999999 |
Target: 5'- uAAGUGAacuuCugGACGAgguucacguGAUGACAUACg -3' miRNA: 3'- -UUUACUgu--GugCUGUU---------UUACUGUGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 124670 | 0.68 | 1 |
Target: 5'- -cGUGACACGCGACccacuGAAGUGAaagAUGCc -3' miRNA: 3'- uuUACUGUGUGCUG-----UUUUACUg--UGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 95647 | 0.67 | 1 |
Target: 5'- ---cGGCauACGCGGCGAAG-GACACGg -3' miRNA: 3'- uuuaCUG--UGUGCUGUUUUaCUGUGUg -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 4741 | 0.68 | 1 |
Target: 5'- -uAUGAUAUuucgAUGACAAA-UGACACAUa -3' miRNA: 3'- uuUACUGUG----UGCUGUUUuACUGUGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 28168 | 0.69 | 1 |
Target: 5'- --uUGGuauUACAUGACGAAAUGACAuCAUu -3' miRNA: 3'- uuuACU---GUGUGCUGUUUUACUGU-GUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 251433 | 0.72 | 0.999972 |
Target: 5'- --uUGuuCACACGACGAGcAUGACgGCGCa -3' miRNA: 3'- uuuACu-GUGUGCUGUUU-UACUG-UGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 234678 | 0.68 | 1 |
Target: 5'- cAAAUGACAaacaaAUGACAAuuaAAUGACAaACa -3' miRNA: 3'- -UUUACUGUg----UGCUGUU---UUACUGUgUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 147725 | 0.71 | 0.999979 |
Target: 5'- uGAGUGACGCACaACAAGGUGAaaaaaauCAUAUg -3' miRNA: 3'- -UUUACUGUGUGcUGUUUUACU-------GUGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 251127 | 0.69 | 1 |
Target: 5'- cAGUGACACGCG------UGAUACACg -3' miRNA: 3'- uUUACUGUGUGCuguuuuACUGUGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 327783 | 0.67 | 1 |
Target: 5'- gAAGUGACcuGCAcuCGGCGu--UGACACAUa -3' miRNA: 3'- -UUUACUG--UGU--GCUGUuuuACUGUGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 214128 | 0.67 | 1 |
Target: 5'- -uAUGAUAaAUGACAAA-UGAUACGCu -3' miRNA: 3'- uuUACUGUgUGCUGUUUuACUGUGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 186932 | 0.7 | 0.999996 |
Target: 5'- uAGGUGACACuaucguucaaagucAUGACAGAGUGugGUACg -3' miRNA: 3'- -UUUACUGUG--------------UGCUGUUUUACugUGUG- -5' |
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770 | 3' | -43.8 | NC_000852.3 | + | 328130 | 0.69 | 0.999999 |
Target: 5'- uGAUGACu--CGGCGu--UGACGCACa -3' miRNA: 3'- uUUACUGuguGCUGUuuuACUGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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