miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
770 3' -43.8 NC_000852.3 + 753 0.66 1
Target:  5'- ---cGugAUGCGGC-AGAUGACAC-Cg -3'
miRNA:   3'- uuuaCugUGUGCUGuUUUACUGUGuG- -5'
770 3' -43.8 NC_000852.3 + 4741 0.68 1
Target:  5'- -uAUGAUAUuucgAUGACAAA-UGACACAUa -3'
miRNA:   3'- uuUACUGUG----UGCUGUUUuACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 26617 0.69 1
Target:  5'- uGGAUGaACACACGACcgc--GACGCAa -3'
miRNA:   3'- -UUUAC-UGUGUGCUGuuuuaCUGUGUg -5'
770 3' -43.8 NC_000852.3 + 28168 0.69 1
Target:  5'- --uUGGuauUACAUGACGAAAUGACAuCAUu -3'
miRNA:   3'- uuuACU---GUGUGCUGUUUUACUGU-GUG- -5'
770 3' -43.8 NC_000852.3 + 38670 0.69 0.999999
Target:  5'- ---cGAUGCACGACAAAuucuuuuucauucGUGACAUg- -3'
miRNA:   3'- uuuaCUGUGUGCUGUUU-------------UACUGUGug -5'
770 3' -43.8 NC_000852.3 + 45538 0.68 1
Target:  5'- ---aGACGCACGAguacaaAAGAUGAaucaACACg -3'
miRNA:   3'- uuuaCUGUGUGCUg-----UUUUACUg---UGUG- -5'
770 3' -43.8 NC_000852.3 + 51125 0.68 1
Target:  5'- cAAAUGACAaAUGACA-AAUGACAaACa -3'
miRNA:   3'- -UUUACUGUgUGCUGUuUUACUGUgUG- -5'
770 3' -43.8 NC_000852.3 + 67919 0.67 1
Target:  5'- -uGUGGCAgAUGGaaaauuuauggucuuCAGGGUGAUACACg -3'
miRNA:   3'- uuUACUGUgUGCU---------------GUUUUACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 78060 0.7 0.999998
Target:  5'- --uUGGUACACaAUAAAAUGACAUACa -3'
miRNA:   3'- uuuACUGUGUGcUGUUUUACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 81459 0.78 0.987106
Target:  5'- aAAAUGACACAaaaaUGACAcaaAAAUGACACAa -3'
miRNA:   3'- -UUUACUGUGU----GCUGU---UUUACUGUGUg -5'
770 3' -43.8 NC_000852.3 + 81492 0.78 0.987106
Target:  5'- cAAAUGACACAaaaaUGACAcaaAAAUGACACAa -3'
miRNA:   3'- -UUUACUGUGU----GCUGU---UUUACUGUGUg -5'
770 3' -43.8 NC_000852.3 + 95647 0.67 1
Target:  5'- ---cGGCauACGCGGCGAAG-GACACGg -3'
miRNA:   3'- uuuaCUG--UGUGCUGUUUUaCUGUGUg -5'
770 3' -43.8 NC_000852.3 + 108474 0.73 0.999848
Target:  5'- aAGAUGAC-CACGAUAAcguAUGAUACAg -3'
miRNA:   3'- -UUUACUGuGUGCUGUUu--UACUGUGUg -5'
770 3' -43.8 NC_000852.3 + 111184 0.77 0.995918
Target:  5'- aAAAUGACAauaaAUGACAAuaAAUGACACAa -3'
miRNA:   3'- -UUUACUGUg---UGCUGUU--UUACUGUGUg -5'
770 3' -43.8 NC_000852.3 + 118513 0.77 0.994416
Target:  5'- cAAAUGACACACuu--AAAUGACACAUg -3'
miRNA:   3'- -UUUACUGUGUGcuguUUUACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 121023 0.72 0.999949
Target:  5'- --cUGAaauUACAUGACAcuuuGAUGGCACGCg -3'
miRNA:   3'- uuuACU---GUGUGCUGUu---UUACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 124670 0.68 1
Target:  5'- -cGUGACACGCGACccacuGAAGUGAaagAUGCc -3'
miRNA:   3'- uuUACUGUGUGCUG-----UUUUACUg--UGUG- -5'
770 3' -43.8 NC_000852.3 + 133263 0.69 0.999999
Target:  5'- uAAGUGAacuuCugGACGAgguucacguGAUGACAUACg -3'
miRNA:   3'- -UUUACUgu--GugCUGUU---------UUACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 141968 0.67 1
Target:  5'- gAAAUGaAUAUAuCGACAAAAUGAUGCu- -3'
miRNA:   3'- -UUUAC-UGUGU-GCUGUUUUACUGUGug -5'
770 3' -43.8 NC_000852.3 + 147725 0.71 0.999979
Target:  5'- uGAGUGACGCACaACAAGGUGAaaaaaauCAUAUg -3'
miRNA:   3'- -UUUACUGUGUGcUGUUUUACU-------GUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.