Results 21 - 40 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
770 | 3' | -43.8 | NC_000852.3 | + | 149810 | 0.7 | 0.999999 |
Target: 5'- aGAAUGGCAaACGGCGGuGUGGgACAUa -3' miRNA: 3'- -UUUACUGUgUGCUGUUuUACUgUGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 157144 | 0.66 | 1 |
Target: 5'- aAAAUGACAaAUGACAAauaAAUGACAa-- -3' miRNA: 3'- -UUUACUGUgUGCUGUU---UUACUGUgug -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 170595 | 0.66 | 1 |
Target: 5'- gGAAUGACAaAUGACA-AAUGACAa-- -3' miRNA: 3'- -UUUACUGUgUGCUGUuUUACUGUgug -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 172749 | 0.66 | 1 |
Target: 5'- uGAUGAUucccaucgcgaauucCGCGACGAuuUGAUGCGCg -3' miRNA: 3'- uUUACUGu--------------GUGCUGUUuuACUGUGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 183621 | 0.7 | 0.999999 |
Target: 5'- aAAAUGACAcCAgGGUAAAAUGACACu- -3' miRNA: 3'- -UUUACUGU-GUgCUGUUUUACUGUGug -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 186932 | 0.7 | 0.999996 |
Target: 5'- uAGGUGACACuaucguucaaagucAUGACAGAGUGugGUACg -3' miRNA: 3'- -UUUACUGUG--------------UGCUGUUUUACugUGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 189527 | 0.7 | 0.999999 |
Target: 5'- cAAUGuGCACGCGACAAGAauugcguUGACAUu- -3' miRNA: 3'- uUUAC-UGUGUGCUGUUUU-------ACUGUGug -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 196068 | 0.67 | 1 |
Target: 5'- ---cGAUAC-CGACGuaaucuUGGCACGCa -3' miRNA: 3'- uuuaCUGUGuGCUGUuuu---ACUGUGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 210170 | 0.66 | 1 |
Target: 5'- ---aGACAC-CGGCGgGGGUGACGcCACc -3' miRNA: 3'- uuuaCUGUGuGCUGU-UUUACUGU-GUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 214128 | 0.67 | 1 |
Target: 5'- -uAUGAUAaAUGACAAA-UGAUACGCu -3' miRNA: 3'- uuUACUGUgUGCUGUUUuACUGUGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 214343 | 0.7 | 0.999999 |
Target: 5'- cGAUGAUcuGCGggaguuCGACGAAAUGACuACACu -3' miRNA: 3'- uUUACUG--UGU------GCUGUUUUACUG-UGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 217590 | 0.66 | 1 |
Target: 5'- ---aGACACACGACuucagGACAg-- -3' miRNA: 3'- uuuaCUGUGUGCUGuuuuaCUGUgug -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 234678 | 0.68 | 1 |
Target: 5'- cAAAUGACAaacaaAUGACAAuuaAAUGACAaACa -3' miRNA: 3'- -UUUACUGUg----UGCUGUU---UUACUGUgUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 242678 | 0.69 | 1 |
Target: 5'- aGAAUGcACGCACGAauaCGAAA-GACAUAUa -3' miRNA: 3'- -UUUAC-UGUGUGCU---GUUUUaCUGUGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 251127 | 0.69 | 1 |
Target: 5'- cAGUGACACGCG------UGAUACACg -3' miRNA: 3'- uUUACUGUGUGCuguuuuACUGUGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 251433 | 0.72 | 0.999972 |
Target: 5'- --uUGuuCACACGACGAGcAUGACgGCGCa -3' miRNA: 3'- uuuACu-GUGUGCUGUUU-UACUG-UGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 267193 | 0.66 | 1 |
Target: 5'- ---gGACACuaucuACGACGcAAUGAaaCACGCa -3' miRNA: 3'- uuuaCUGUG-----UGCUGUuUUACU--GUGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 278152 | 0.66 | 1 |
Target: 5'- -uGUGAgCGagguuauUGACAAGAUGAUACACu -3' miRNA: 3'- uuUACU-GUgu-----GCUGUUUUACUGUGUG- -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 292686 | 0.7 | 0.999998 |
Target: 5'- -uAUGACAaaAUGACAAAAUGACAUu- -3' miRNA: 3'- uuUACUGUg-UGCUGUUUUACUGUGug -5' |
|||||||
770 | 3' | -43.8 | NC_000852.3 | + | 298520 | 0.66 | 1 |
Target: 5'- uGGUGAUAUgaaaggGCGACGAGA-GGCAUAUa -3' miRNA: 3'- uUUACUGUG------UGCUGUUUUaCUGUGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home