miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7711 5' -54.7 NC_001973.1 + 107897 0.66 0.956936
Target:  5'- uGGCCGACGccgaACugAgcGCCCAcCGu -3'
miRNA:   3'- -CCGGCUGCucg-UGugUauCGGGUuGC- -5'
7711 5' -54.7 NC_001973.1 + 33034 0.66 0.956936
Target:  5'- aGCCGACGAGCcaGCAgaa-CCAGCc -3'
miRNA:   3'- cCGGCUGCUCGugUGUaucgGGUUGc -5'
7711 5' -54.7 NC_001973.1 + 123076 0.66 0.956936
Target:  5'- cGCCcgGGCGAGCA-GCuc-GCCCGACa -3'
miRNA:   3'- cCGG--CUGCUCGUgUGuauCGGGUUGc -5'
7711 5' -54.7 NC_001973.1 + 126535 0.66 0.956936
Target:  5'- uGGCCGAUcucGCACACGgccagcgugUGGCgCAGCc -3'
miRNA:   3'- -CCGGCUGcu-CGUGUGU---------AUCGgGUUGc -5'
7711 5' -54.7 NC_001973.1 + 13820 0.66 0.956936
Target:  5'- uGGCCacGACGcaAGCGCACA-GGUCgAACa -3'
miRNA:   3'- -CCGG--CUGC--UCGUGUGUaUCGGgUUGc -5'
7711 5' -54.7 NC_001973.1 + 55427 0.66 0.956936
Target:  5'- cGUCGGCG-GCG-GCG-GGCCCGACGg -3'
miRNA:   3'- cCGGCUGCuCGUgUGUaUCGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 86273 0.66 0.956936
Target:  5'- cGCCGAuCGuGUACgaaAUAGCCgAGCGc -3'
miRNA:   3'- cCGGCU-GCuCGUGug-UAUCGGgUUGC- -5'
7711 5' -54.7 NC_001973.1 + 88555 0.66 0.956936
Target:  5'- cGCCGGCGucGGCGCGC---GCCCucCGc -3'
miRNA:   3'- cCGGCUGC--UCGUGUGuauCGGGuuGC- -5'
7711 5' -54.7 NC_001973.1 + 101544 0.66 0.956936
Target:  5'- uGGCUGAUguugGGGUgGCGCGUGGUCCAGgCGc -3'
miRNA:   3'- -CCGGCUG----CUCG-UGUGUAUCGGGUU-GC- -5'
7711 5' -54.7 NC_001973.1 + 45851 0.66 0.953055
Target:  5'- gGGCCugggcgucGCGGGCGCGCGcuccucGGCCgCGGCGc -3'
miRNA:   3'- -CCGGc-------UGCUCGUGUGUa-----UCGG-GUUGC- -5'
7711 5' -54.7 NC_001973.1 + 89597 0.66 0.953055
Target:  5'- uGGUCGcCacGUACACGUGGCCgGGCa -3'
miRNA:   3'- -CCGGCuGcuCGUGUGUAUCGGgUUGc -5'
7711 5' -54.7 NC_001973.1 + 101152 0.66 0.953055
Target:  5'- aGCUGAgcaCGAGCGCGCAgucGUgCAGCa -3'
miRNA:   3'- cCGGCU---GCUCGUGUGUau-CGgGUUGc -5'
7711 5' -54.7 NC_001973.1 + 122574 0.66 0.953055
Target:  5'- uGGCCgGACGGGCGC-C--GGUCCGAa- -3'
miRNA:   3'- -CCGG-CUGCUCGUGuGuaUCGGGUUgc -5'
7711 5' -54.7 NC_001973.1 + 20928 0.66 0.953055
Target:  5'- aGCCGAuugcguucuguCGAGCcgGCGCGguaaacugAGCUCGGCGg -3'
miRNA:   3'- cCGGCU-----------GCUCG--UGUGUa-------UCGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 77664 0.66 0.953055
Target:  5'- uGGCCaccGACcGGCAgAgGUGcucGCCCGACGa -3'
miRNA:   3'- -CCGG---CUGcUCGUgUgUAU---CGGGUUGC- -5'
7711 5' -54.7 NC_001973.1 + 121465 0.66 0.953055
Target:  5'- cGCCGGaauaUGGGCGCGCccGGCCaAACGc -3'
miRNA:   3'- cCGGCU----GCUCGUGUGuaUCGGgUUGC- -5'
7711 5' -54.7 NC_001973.1 + 121642 0.66 0.952654
Target:  5'- uGGCCGACGcgcgccgccucgaAGgGCGCGUcGCUCGcgGCGc -3'
miRNA:   3'- -CCGGCUGC-------------UCgUGUGUAuCGGGU--UGC- -5'
7711 5' -54.7 NC_001973.1 + 77017 0.66 0.952654
Target:  5'- gGGCggCGGCGGcGCGCGCAaggacgaUAGCuCCAaaGCGg -3'
miRNA:   3'- -CCG--GCUGCU-CGUGUGU-------AUCG-GGU--UGC- -5'
7711 5' -54.7 NC_001973.1 + 33391 0.66 0.952654
Target:  5'- aGGCCGACGAcgcguccGCGCAaucCAUcgucAGCUCggUGu -3'
miRNA:   3'- -CCGGCUGCU-------CGUGU---GUA----UCGGGuuGC- -5'
7711 5' -54.7 NC_001973.1 + 95690 0.66 0.950616
Target:  5'- cGGcCCGACGAGCccuacaccgccgacgGCGCGguGCgCCGGCu -3'
miRNA:   3'- -CC-GGCUGCUCG---------------UGUGUauCG-GGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.