miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7722 5' -54.6 NC_001973.1 + 117938 0.68 0.898068
Target:  5'- -gCGCGGCaagCGCGaCGGGCGCGAc- -3'
miRNA:   3'- gaGCGUCGagaGCGC-GCUUGUGCUug -5'
7722 5' -54.6 NC_001973.1 + 101133 0.68 0.897415
Target:  5'- --aGCAGauagCUCGUGUuggagcuGAGCACGAGCg -3'
miRNA:   3'- gagCGUCga--GAGCGCG-------CUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 46396 0.68 0.896102
Target:  5'- uUUGCGGCgcgCGCGCGAcgacgacgacucggACGCGAccaGCg -3'
miRNA:   3'- gAGCGUCGagaGCGCGCU--------------UGUGCU---UG- -5'
7722 5' -54.6 NC_001973.1 + 146019 0.68 0.891434
Target:  5'- -cCGcCGGCUCgaGCGCGggUcgACGGACg -3'
miRNA:   3'- gaGC-GUCGAGagCGCGCuuG--UGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 134260 0.68 0.891434
Target:  5'- --aGCGGCcaUCUCGC-CGAAcCAUGGACa -3'
miRNA:   3'- gagCGUCG--AGAGCGcGCUU-GUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 34228 0.68 0.885266
Target:  5'- -gUGCAGCUCgCGCGCGucguugcuguccaucACGcCGAACa -3'
miRNA:   3'- gaGCGUCGAGaGCGCGCu--------------UGU-GCUUG- -5'
7722 5' -54.6 NC_001973.1 + 81780 0.68 0.884569
Target:  5'- gUCGC-GCUCg-GCGCGAaaguGCACGGccGCg -3'
miRNA:   3'- gAGCGuCGAGagCGCGCU----UGUGCU--UG- -5'
7722 5' -54.6 NC_001973.1 + 2900 0.68 0.877478
Target:  5'- gUCGCGcuuuGCUCgcCGCGCGAucguCGCGAucACg -3'
miRNA:   3'- gAGCGU----CGAGa-GCGCGCUu---GUGCU--UG- -5'
7722 5' -54.6 NC_001973.1 + 114423 0.68 0.877478
Target:  5'- gUCGCgAGC-CUgCGCGCGAGCcggcucGCGAAg -3'
miRNA:   3'- gAGCG-UCGaGA-GCGCGCUUG------UGCUUg -5'
7722 5' -54.6 NC_001973.1 + 73888 0.68 0.877478
Target:  5'- gCUCGUucuccacGCUgaCGUGCGGcgACGCGAGCg -3'
miRNA:   3'- -GAGCGu------CGAgaGCGCGCU--UGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 46322 0.68 0.877478
Target:  5'- gUCGCcuUUCUCGCGCaGGGCGCGcuGCu -3'
miRNA:   3'- gAGCGucGAGAGCGCG-CUUGUGCu-UG- -5'
7722 5' -54.6 NC_001973.1 + 27861 0.68 0.877478
Target:  5'- gCUgGCGGC-CgCGgcCGCGGGCGCGGGCg -3'
miRNA:   3'- -GAgCGUCGaGaGC--GCGCUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 100378 0.68 0.876033
Target:  5'- -aCGUAGC-CUCGCGCGucgccgcccaccACACGAucuGCg -3'
miRNA:   3'- gaGCGUCGaGAGCGCGCu-----------UGUGCU---UG- -5'
7722 5' -54.6 NC_001973.1 + 124001 0.68 0.875307
Target:  5'- gUCGCGGC-CUgaccagucgggcgaCGCGCGcGCACGGGa -3'
miRNA:   3'- gAGCGUCGaGA--------------GCGCGCuUGUGCUUg -5'
7722 5' -54.6 NC_001973.1 + 63598 0.68 0.870165
Target:  5'- --aGCuGCUCUaCGCGCu--CACGGACg -3'
miRNA:   3'- gagCGuCGAGA-GCGCGcuuGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 72869 0.68 0.870165
Target:  5'- cCUCGCGcGC-CUCGCGCcacgcgcucuGAACGCGcuCg -3'
miRNA:   3'- -GAGCGU-CGaGAGCGCG----------CUUGUGCuuG- -5'
7722 5' -54.6 NC_001973.1 + 23678 0.69 0.862636
Target:  5'- gCUCGCGGgcCUC-CGCGCGucGACGCGccAGCu -3'
miRNA:   3'- -GAGCGUC--GAGaGCGCGC--UUGUGC--UUG- -5'
7722 5' -54.6 NC_001973.1 + 88836 0.69 0.861872
Target:  5'- cCUCGCAcacgccCUCgagCGUGCGAaaggucacguugaACGCGAGCg -3'
miRNA:   3'- -GAGCGUc-----GAGa--GCGCGCU-------------UGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 114176 0.69 0.854897
Target:  5'- aUC-CGGCUCgCuCGCGAGCACGGAa -3'
miRNA:   3'- gAGcGUCGAGaGcGCGCUUGUGCUUg -5'
7722 5' -54.6 NC_001973.1 + 28650 0.69 0.854897
Target:  5'- -cUGCAGCU---GCGCGAGCGCGGc- -3'
miRNA:   3'- gaGCGUCGAgagCGCGCUUGUGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.