miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7722 5' -54.6 NC_001973.1 + 88934 1.08 0.004424
Target:  5'- uCUCGCAGCUCUCGCGCGAACACGAACc -3'
miRNA:   3'- -GAGCGUCGAGAGCGCGCUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 5891 0.78 0.370509
Target:  5'- -gCGCAGCg--CGCGCGA-CGCGAACg -3'
miRNA:   3'- gaGCGUCGagaGCGCGCUuGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 140760 0.77 0.421616
Target:  5'- -cCGCgAGUUCUCGCGCGuguACAgCGAGCg -3'
miRNA:   3'- gaGCG-UCGAGAGCGCGCu--UGU-GCUUG- -5'
7722 5' -54.6 NC_001973.1 + 109520 0.77 0.421616
Target:  5'- uUCGCcgcuuGGCUCUUGCGCuuuugGGGCGCGAGCc -3'
miRNA:   3'- gAGCG-----UCGAGAGCGCG-----CUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 70085 0.77 0.439572
Target:  5'- --gGCgGGCUCgauguugUGCGCGAGCGCGAACg -3'
miRNA:   3'- gagCG-UCGAGa------GCGCGCUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 102178 0.75 0.505614
Target:  5'- cCUCGUggGGCUUUUggGCGCGAACGCGAc- -3'
miRNA:   3'- -GAGCG--UCGAGAG--CGCGCUUGUGCUug -5'
7722 5' -54.6 NC_001973.1 + 137198 0.74 0.565392
Target:  5'- aCUCGCGGCgcgagUCGCGCGGcgGCGCGuccGCa -3'
miRNA:   3'- -GAGCGUCGag---AGCGCGCU--UGUGCu--UG- -5'
7722 5' -54.6 NC_001973.1 + 114095 0.73 0.637145
Target:  5'- --aGCGGCUCgCuCGCGAGCACGGAa -3'
miRNA:   3'- gagCGUCGAGaGcGCGCUUGUGCUUg -5'
7722 5' -54.6 NC_001973.1 + 83863 0.73 0.637145
Target:  5'- --aGCgAGCUCgccCGCGCGcGGCGCGAGCu -3'
miRNA:   3'- gagCG-UCGAGa--GCGCGC-UUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 32575 0.73 0.657726
Target:  5'- -cCGuCGGCUCggCGCGCugcGACACGGACg -3'
miRNA:   3'- gaGC-GUCGAGa-GCGCGc--UUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 89459 0.72 0.678224
Target:  5'- cCUCGCGGCUCacgUCGgGCG-ACACGu-- -3'
miRNA:   3'- -GAGCGUCGAG---AGCgCGCuUGUGCuug -5'
7722 5' -54.6 NC_001973.1 + 108922 0.72 0.68842
Target:  5'- -gCGCGucacGCUCUCGCugcucGCGAACuCGAGCa -3'
miRNA:   3'- gaGCGU----CGAGAGCG-----CGCUUGuGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 108253 0.72 0.698568
Target:  5'- aUCGaCGGCUgCcggCGCGCGGAgACGGACc -3'
miRNA:   3'- gAGC-GUCGA-Ga--GCGCGCUUgUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 38007 0.71 0.738505
Target:  5'- --gGCGGaCUUUagcaGCGCGAGCACGAAg -3'
miRNA:   3'- gagCGUC-GAGAg---CGCGCUUGUGCUUg -5'
7722 5' -54.6 NC_001973.1 + 146067 0.71 0.757947
Target:  5'- -cCGCGGCgccgagccggCUCGgGCGGGCGgGGACu -3'
miRNA:   3'- gaGCGUCGa---------GAGCgCGCUUGUgCUUG- -5'
7722 5' -54.6 NC_001973.1 + 136638 0.71 0.767504
Target:  5'- uUUGCAGCUcCUCG-GCGAACAgccgcUGGGCg -3'
miRNA:   3'- gAGCGUCGA-GAGCgCGCUUGU-----GCUUG- -5'
7722 5' -54.6 NC_001973.1 + 80173 0.71 0.767504
Target:  5'- -gCGCAGCaucugCUCG-GCGAGCAggcCGAGCg -3'
miRNA:   3'- gaGCGUCGa----GAGCgCGCUUGU---GCUUG- -5'
7722 5' -54.6 NC_001973.1 + 8390 0.7 0.776939
Target:  5'- -cCGCAGCcgcaUCUacuugGCGCuGGGCGCGAACg -3'
miRNA:   3'- gaGCGUCG----AGAg----CGCG-CUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 54760 0.7 0.786243
Target:  5'- gCUCGCGucGCccagCUCGUGCcuguACACGAGCa -3'
miRNA:   3'- -GAGCGU--CGa---GAGCGCGcu--UGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 63164 0.7 0.795406
Target:  5'- -gCGCAcgagcGCgaaCUCGCGCGGACA-GAGCg -3'
miRNA:   3'- gaGCGU-----CGa--GAGCGCGCUUGUgCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.