miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7722 5' -54.6 NC_001973.1 + 777 0.66 0.947023
Target:  5'- -cCGUAGUUgcCUCGCGUGAaauccGC-CGAACg -3'
miRNA:   3'- gaGCGUCGA--GAGCGCGCU-----UGuGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 886 0.67 0.916553
Target:  5'- aCUCGgccguCAGCUCgCGCGCGuucuCGAGCc -3'
miRNA:   3'- -GAGC-----GUCGAGaGCGCGCuuguGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 2900 0.68 0.877478
Target:  5'- gUCGCGcuuuGCUCgcCGCGCGAucguCGCGAucACg -3'
miRNA:   3'- gAGCGU----CGAGa-GCGCGCUu---GUGCU--UG- -5'
7722 5' -54.6 NC_001973.1 + 4712 0.67 0.927676
Target:  5'- aCUCGUAGUggUCGCGCaAACGgaucaaguCGAACg -3'
miRNA:   3'- -GAGCGUCGagAGCGCGcUUGU--------GCUUG- -5'
7722 5' -54.6 NC_001973.1 + 5891 0.78 0.370509
Target:  5'- -gCGCAGCg--CGCGCGA-CGCGAACg -3'
miRNA:   3'- gaGCGUCGagaGCGCGCUuGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 7261 0.67 0.91063
Target:  5'- -gCGCAGCgggCUCgGCGCGcGGCGCGcccGCu -3'
miRNA:   3'- gaGCGUCGa--GAG-CGCGC-UUGUGCu--UG- -5'
7722 5' -54.6 NC_001973.1 + 8390 0.7 0.776939
Target:  5'- -cCGCAGCcgcaUCUacuugGCGCuGGGCGCGAACg -3'
miRNA:   3'- gaGCGUCG----AGAg----CGCG-CUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 8845 0.69 0.846953
Target:  5'- -cCGC-GCUgCUgGCGCGGcgACACGGGCu -3'
miRNA:   3'- gaGCGuCGA-GAgCGCGCU--UGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 10267 0.66 0.947023
Target:  5'- -aCGgAGUUUgcgUCGCGUcgucGAACGCGGACg -3'
miRNA:   3'- gaGCgUCGAG---AGCGCG----CUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 10621 0.68 0.898068
Target:  5'- cCUCGCGGCacaggucgcaaUCggCGUGCGAccuGCACGGc- -3'
miRNA:   3'- -GAGCGUCG-----------AGa-GCGCGCU---UGUGCUug -5'
7722 5' -54.6 NC_001973.1 + 15353 0.66 0.947023
Target:  5'- -gCGCGGCg-UUGCGgugucguacaCGAACACGGGCu -3'
miRNA:   3'- gaGCGUCGagAGCGC----------GCUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 22792 0.66 0.956809
Target:  5'- --gGCAGUUCa-GCGCGAACgauugccggugcgccGCGGGCu -3'
miRNA:   3'- gagCGUCGAGagCGCGCUUG---------------UGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 22972 0.66 0.95527
Target:  5'- -gCGCGGCgg-CGCGCcGACGCcGACg -3'
miRNA:   3'- gaGCGUCGagaGCGCGcUUGUGcUUG- -5'
7722 5' -54.6 NC_001973.1 + 23678 0.69 0.862636
Target:  5'- gCUCGCGGgcCUC-CGCGCGucGACGCGccAGCu -3'
miRNA:   3'- -GAGCGUC--GAGaGCGCGC--UUGUGC--UUG- -5'
7722 5' -54.6 NC_001973.1 + 23821 0.67 0.932874
Target:  5'- -aCGCGGCcCUCGC-CGAGuucaagUACGAGCc -3'
miRNA:   3'- gaGCGUCGaGAGCGcGCUU------GUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 27861 0.68 0.877478
Target:  5'- gCUgGCGGC-CgCGgcCGCGGGCGCGGGCg -3'
miRNA:   3'- -GAgCGUCGaGaGC--GCGCUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 28062 0.66 0.93783
Target:  5'- -cUGUAGUUaagggacgCGCGCGGGCACGAc- -3'
miRNA:   3'- gaGCGUCGAga------GCGCGCUUGUGCUug -5'
7722 5' -54.6 NC_001973.1 + 28650 0.69 0.854897
Target:  5'- -cUGCAGCU---GCGCGAGCGCGGc- -3'
miRNA:   3'- gaGCGUCGAgagCGCGCUUGUGCUug -5'
7722 5' -54.6 NC_001973.1 + 29698 0.67 0.916553
Target:  5'- cCUCGCccgacugaggAGCgUC-CGCGCGGACAUGcaaAACg -3'
miRNA:   3'- -GAGCG----------UCG-AGaGCGCGCUUGUGC---UUG- -5'
7722 5' -54.6 NC_001973.1 + 31153 0.69 0.830479
Target:  5'- uUCGaGGCgacgCUCcaCGCGGGCACGGACg -3'
miRNA:   3'- gAGCgUCGa---GAGc-GCGCUUGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.