miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 27872 0.71 0.321924
Target:  5'- cGGCcGCGGgcGCGgGCGCGCUCu--- -3'
miRNA:   3'- -CCGcCGCCuuCGCgCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 29980 0.68 0.511367
Target:  5'- cGGUGGUGGgcGCGUauaucuGCGaGCCCGa-- -3'
miRNA:   3'- -CCGCCGCCuuCGCG------CGCgCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 30407 0.77 0.128657
Target:  5'- cGGCGGCGGAGGCGC-CGCGaacugCCGa-- -3'
miRNA:   3'- -CCGCCGCCUUCGCGcGCGCg----GGCauu -5'
7728 3' -62.9 NC_001973.1 + 31871 0.66 0.587659
Target:  5'- --aGGCGGuGGCGCGCaCGUCgGUGu -3'
miRNA:   3'- ccgCCGCCuUCGCGCGcGCGGgCAUu -5'
7728 3' -62.9 NC_001973.1 + 32326 0.66 0.587659
Target:  5'- gGGCGuccGCGGgcGUGCGaaaGCGCacuCCGUAc -3'
miRNA:   3'- -CCGC---CGCCuuCGCGCg--CGCG---GGCAUu -5'
7728 3' -62.9 NC_001973.1 + 34969 0.66 0.587659
Target:  5'- cGCGcucaCGGAcgaGGUGUGCGUGCCCGc-- -3'
miRNA:   3'- cCGCc---GCCU---UCGCGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 37757 0.66 0.616905
Target:  5'- uGGCGGCGGcaguguagaucgGGGgGCGC-CGCCgCGc-- -3'
miRNA:   3'- -CCGCCGCC------------UUCgCGCGcGCGG-GCauu -5'
7728 3' -62.9 NC_001973.1 + 38842 0.69 0.422431
Target:  5'- cGGCGGCGGcGAGgGCGCGgGCg----- -3'
miRNA:   3'- -CCGCCGCC-UUCgCGCGCgCGggcauu -5'
7728 3' -62.9 NC_001973.1 + 39277 0.69 0.448168
Target:  5'- cGCGGCGc-AGCGCGUGC-UCCGUGu -3'
miRNA:   3'- cCGCCGCcuUCGCGCGCGcGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 39418 0.7 0.389538
Target:  5'- cGGCcGCGGugAGGCGCGuCGCGUCCa--- -3'
miRNA:   3'- -CCGcCGCC--UUCGCGC-GCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 42609 0.66 0.616905
Target:  5'- uGCGGCGcGAGgGCGCGguCGCCaCGg-- -3'
miRNA:   3'- cCGCCGCcUUCgCGCGC--GCGG-GCauu -5'
7728 3' -62.9 NC_001973.1 + 42937 0.72 0.281941
Target:  5'- cGUGGCGGAGGagaaGCGCGCUCGUc- -3'
miRNA:   3'- cCGCCGCCUUCgcg-CGCGCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 44420 0.66 0.601285
Target:  5'- aGCGGCuccgcucggGGAucgaacgggcgcucgGGCGCGgGCGCUCGg-- -3'
miRNA:   3'- cCGCCG---------CCU---------------UCGCGCgCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 44598 0.73 0.240391
Target:  5'- cGGCGGCGGcGAGCGgGCuCGgCCCGa-- -3'
miRNA:   3'- -CCGCCGCC-UUCGCgCGcGC-GGGCauu -5'
7728 3' -62.9 NC_001973.1 + 45660 0.66 0.577961
Target:  5'- cGCGGCcugcgcgucucGGAuucGCGCGUGgGCgCCGUGc -3'
miRNA:   3'- cCGCCG-----------CCUu--CGCGCGCgCG-GGCAUu -5'
7728 3' -62.9 NC_001973.1 + 45805 0.66 0.606162
Target:  5'- aGGCGGCguuGGGAGUcaaucuaGUGUGCGCCgGc-- -3'
miRNA:   3'- -CCGCCG---CCUUCG-------CGCGCGCGGgCauu -5'
7728 3' -62.9 NC_001973.1 + 45966 0.69 0.430912
Target:  5'- cGGCGGCc--GGCGCGCuCGCCCu--- -3'
miRNA:   3'- -CCGCCGccuUCGCGCGcGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 46379 0.67 0.557717
Target:  5'- cGGUGGUuccugagGGAuuugcGGCGCGCGCGCgaCGa-- -3'
miRNA:   3'- -CCGCCG-------CCU-----UCGCGCGCGCGg-GCauu -5'
7728 3' -62.9 NC_001973.1 + 50088 0.71 0.336161
Target:  5'- gGGCGGCGGcgccacggaGGGCgGCgGCGCcGCCgCGUAAa -3'
miRNA:   3'- -CCGCCGCC---------UUCG-CG-CGCG-CGG-GCAUU- -5'
7728 3' -62.9 NC_001973.1 + 50281 0.67 0.539579
Target:  5'- cGGCacauGCGGAugcGGCGCuugccguucaccGUGCGCUCGUAGc -3'
miRNA:   3'- -CCGc---CGCCU---UCGCG------------CGCGCGGGCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.