miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 3569 0.68 0.502097
Target:  5'- gGGCGcGCGauGAccgacGGCGCGCGCuucgGCUCGUAc -3'
miRNA:   3'- -CCGC-CGC--CU-----UCGCGCGCG----CGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 5887 0.68 0.492902
Target:  5'- uGCGGCGc-AGCGCGCGCGaCgCGa-- -3'
miRNA:   3'- cCGCCGCcuUCGCGCGCGC-GgGCauu -5'
7728 3' -62.9 NC_001973.1 + 6209 0.73 0.240391
Target:  5'- cGGCGGCGcGGugccGGCGCG-GCGCCCu--- -3'
miRNA:   3'- -CCGCCGC-CU----UCGCGCgCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 6418 0.81 0.071988
Target:  5'- cGCGGCGGcGGCGCgccgacgaGCGCGCCCGUc- -3'
miRNA:   3'- cCGCCGCCuUCGCG--------CGCGCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 6511 0.66 0.616905
Target:  5'- gGGCGGCGcGGGCGUGCcgacgauuuuGCgGCUgGUGAa -3'
miRNA:   3'- -CCGCCGCcUUCGCGCG----------CG-CGGgCAUU- -5'
7728 3' -62.9 NC_001973.1 + 7262 0.72 0.308141
Target:  5'- cGCaGCGGGcucGGCGCgcgGCGCGCCCGc-- -3'
miRNA:   3'- cCGcCGCCU---UCGCG---CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 7939 0.69 0.430912
Target:  5'- cGCGGcCGGcguGGUGCaCGCGCCCGc-- -3'
miRNA:   3'- cCGCC-GCCu--UCGCGcGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 8305 0.74 0.229496
Target:  5'- cGGCGGCGGAGGCGCcgaacaaggaGUGUcuGUUCGUAGa -3'
miRNA:   3'- -CCGCCGCCUUCGCG----------CGCG--CGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 9821 0.66 0.596413
Target:  5'- cGGCGucguCGGAgaaGGCGCuuuccucGCGCGCCCa--- -3'
miRNA:   3'- -CCGCc---GCCU---UCGCG-------CGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 10050 0.7 0.381581
Target:  5'- uGGUGGCGcacGUGcCGCagGCGCCCGUGAa -3'
miRNA:   3'- -CCGCCGCcuuCGC-GCG--CGCGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 10755 0.75 0.194612
Target:  5'- aGCGGCGGguGCGCGaCGgGCUCGUc- -3'
miRNA:   3'- cCGCCGCCuuCGCGC-GCgCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 13460 0.68 0.456939
Target:  5'- cGUGGCGGAGGCcaCGCG-GCCCa--- -3'
miRNA:   3'- cCGCCGCCUUCGc-GCGCgCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 14016 0.66 0.616905
Target:  5'- cGGUGGCGGGcGGCGuCG-GCGUCgCGUu- -3'
miRNA:   3'- -CCGCCGCCU-UCGC-GCgCGCGG-GCAuu -5'
7728 3' -62.9 NC_001973.1 + 16313 0.67 0.520706
Target:  5'- -uCGGacCGGAcGCGUGCGCGCUCGa-- -3'
miRNA:   3'- ccGCC--GCCUuCGCGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 16925 0.66 0.581837
Target:  5'- cGGCGGCGcagcaaaaaGAAGgGCGUuuccgcgaagcggccGUGCCCGa-- -3'
miRNA:   3'- -CCGCCGC---------CUUCgCGCG---------------CGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 17111 0.69 0.414052
Target:  5'- uGGCGucccaGCGG-AGCGCGgGCGCCaCGc-- -3'
miRNA:   3'- -CCGC-----CGCCuUCGCGCgCGCGG-GCauu -5'
7728 3' -62.9 NC_001973.1 + 19539 0.67 0.530112
Target:  5'- aGGCGGUGcGcGGCGUuuaCGUGCCCGa-- -3'
miRNA:   3'- -CCGCCGC-CuUCGCGc--GCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 21755 0.66 0.577961
Target:  5'- uGGCGcGCauuuauaAAGCGCGCGCGCUCu--- -3'
miRNA:   3'- -CCGC-CGcc-----UUCGCGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 23571 0.7 0.373732
Target:  5'- cGGcCGGCGGA--CGCGC-CGCCCGc-- -3'
miRNA:   3'- -CC-GCCGCCUucGCGCGcGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 24129 0.75 0.190025
Target:  5'- gGGCGagcucGCGGguGCGCGCGCcGCCCGc-- -3'
miRNA:   3'- -CCGC-----CGCCuuCGCGCGCG-CGGGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.