miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 86460 1.07 0.000953
Target:  5'- cGGCGGCGGAAGCGCGCGCGCCCGUAAc -3'
miRNA:   3'- -CCGCCGCCUUCGCGCGCGCGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 6418 0.81 0.071988
Target:  5'- cGCGGCGGcGGCGCgccgacgaGCGCGCCCGUc- -3'
miRNA:   3'- cCGCCGCCuUCGCG--------CGCGCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 51655 0.8 0.090546
Target:  5'- aGGCGaccgccgaggacGCGGAGGCGCGCGCGCgCGa-- -3'
miRNA:   3'- -CCGC------------CGCCUUCGCGCGCGCGgGCauu -5'
7728 3' -62.9 NC_001973.1 + 53861 0.78 0.125191
Target:  5'- cGGCGGCGGcgccgccGAGCGCG-GCGgCCGUGg -3'
miRNA:   3'- -CCGCCGCC-------UUCGCGCgCGCgGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 30407 0.77 0.128657
Target:  5'- cGGCGGCGGAGGCGC-CGCGaacugCCGa-- -3'
miRNA:   3'- -CCGCCGCCUUCGCGcGCGCg----GGCauu -5'
7728 3' -62.9 NC_001973.1 + 89537 0.77 0.128657
Target:  5'- gGGCGGUGGGcgaGGCG-GUGCGCCCGa-- -3'
miRNA:   3'- -CCGCCGCCU---UCGCgCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 83034 0.77 0.142021
Target:  5'- cGGCGG-GcGAGGCG-GCGCGCCCGUc- -3'
miRNA:   3'- -CCGCCgC-CUUCGCgCGCGCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 132548 0.77 0.145555
Target:  5'- cGGCGGCGGGcucgAGCGCggcggugugGCGCGCCgUGUAu -3'
miRNA:   3'- -CCGCCGCCU----UCGCG---------CGCGCGG-GCAUu -5'
7728 3' -62.9 NC_001973.1 + 101559 0.76 0.167272
Target:  5'- uGGCGcGUGGuccAGGCGCGCacguugcucacgucGCGCCCGUAGu -3'
miRNA:   3'- -CCGC-CGCC---UUCGCGCG--------------CGCGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 94726 0.75 0.181135
Target:  5'- aGGCGGcCGGcaa-GCGCGCGUCCGUGu -3'
miRNA:   3'- -CCGCC-GCCuucgCGCGCGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 24129 0.75 0.190025
Target:  5'- gGGCGagcucGCGGguGCGCGCGCcGCCCGc-- -3'
miRNA:   3'- -CCGC-----CGCCuuCGCGCGCG-CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 90314 0.75 0.190025
Target:  5'- cGGuCGGCGGGcgaGGCG-GUGCGCCCGa-- -3'
miRNA:   3'- -CC-GCCGCCU---UCGCgCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 10755 0.75 0.194612
Target:  5'- aGCGGCGGguGCGCGaCGgGCUCGUc- -3'
miRNA:   3'- cCGCCGCCuuCGCGC-GCgCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 67610 0.74 0.213939
Target:  5'- uGGCGGCGGAgcuGGUGCcggcCGCGUCCGa-- -3'
miRNA:   3'- -CCGCCGCCU---UCGCGc---GCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 87116 0.74 0.219022
Target:  5'- cGCGuGCGcGgcGUGCGCGCGCCgGUGc -3'
miRNA:   3'- cCGC-CGC-CuuCGCGCGCGCGGgCAUu -5'
7728 3' -62.9 NC_001973.1 + 77017 0.74 0.229496
Target:  5'- gGGCGGCGGcGGCGCGCGCaaggacgauaGCuCCa--- -3'
miRNA:   3'- -CCGCCGCCuUCGCGCGCG----------CG-GGcauu -5'
7728 3' -62.9 NC_001973.1 + 8305 0.74 0.229496
Target:  5'- cGGCGGCGGAGGCGCcgaacaaggaGUGUcuGUUCGUAGa -3'
miRNA:   3'- -CCGCCGCCUUCGCG----------CGCG--CGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 6209 0.73 0.240391
Target:  5'- cGGCGGCGcGGugccGGCGCG-GCGCCCu--- -3'
miRNA:   3'- -CCGCCGC-CU----UCGCGCgCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 61118 0.73 0.240391
Target:  5'- cGGCGGCGG-GGCGCGgCGUcgcuccucgaGCUCGUAc -3'
miRNA:   3'- -CCGCCGCCuUCGCGC-GCG----------CGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 44598 0.73 0.240391
Target:  5'- cGGCGGCGGcGAGCGgGCuCGgCCCGa-- -3'
miRNA:   3'- -CCGCCGCC-UUCGCgCGcGC-GGGCauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.